Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1520 ATGGAAAACAATAACAATCATCACAACTTCAAAGAAATCATAACATCCAATTCTGACGAAAGAGGCTTTCAAGGTTTCTCTGCTAAAAAGAGTTGCTCTAAAGAGAGAAGGGATTTCGATTTAAATGAACCCATAATCAATACAAGCCCCGAGGCTTCTCCTCCTCGCATCGATATGAATTTGGTTCCAAATTCTCAGGTTTCTGATGATAATAATTGCCTTGTGGCAATGGGAGGGTCCCAACCTCTTGCTCCGGCCTTGGATTTTTCACTTGCTGCTCCTACACGAGTTACTGAGCAAGTGCACTCCTCCAACGATGCGAAGACGGTGAAGTTTCCATTTGATCTTAATGCTAAACTTGATGAGGAGGAGCCAATTTCTTGCTCCGAGGAAGCACGCGCCAAAGTTTGTGGCGGGAGTAGTGAAACGAGACCCGCAACTTCTAATGAGACTAGGCTCCCCCATTCTGCATCAGCTGACAACATCGGACCTTTACGTTCCTTTGATTTGGAGGTCACTCCAGATGTTCCTCCTACAAATGCTGCTGACAATGACAATGAAGACAGAGCCAGTGCTGTTGAGGGAGGATCTGGGTCCGAAAGCAGgaagagaaatagagaggagGAGGAATGTGAGAAAGTGCCTGGGAGGGCTTTCCGTGGGGAAACAGTGGCAGTGGAAATTGAGAGCGAAAAAAAGACCATAGTGGATGATGGTTATCGCTGGCGCAAGTATGGACAGAAGATTATCAAGGGAAATTCATACCCTAGGGCCTACTACAAATGCACAAGTGCTGAGTGTTCCGTAAGGAAGCACGTGGAAAGAGATTCACGCAACTCAAAAAATGTGATTACTACTTATGAGGGAAAACACAATCATGAACTGCCACCCCCTAAGAATAACAACAAGAAACAGCATGTAGATAATGAAGATGGTGAAGATGATGGCCGTGAAGAACTTGCTGCTGCTACTGCCAATGCTATATCAACTTTTGGATTACCTGGGAGTCTCCCAAAGCCTGCAGAACCTCAAGTTCACACTCTTACACTTCGTAATGACACAAATCGTGAATTTGCCACTGGGTTTCTGAGGCCCAACAACCGTTTTGGAAGTTTCAATAATAACATGAATATTGGGTCTTCCTCCACCCCCCAACAAATGCACTTTTCTTCCTTGAATAACACTAATACCATGCCTTACCGCTCCTATCGACGTAGCCTTGACCGTTATGCTACCCCTCAACCCGGTCCTTCAATGTTTCCTGAATTTCCAACTTCACCACCATTTAACATTCCTCCTTCTTCTGGAGTTAGGCTTAATCCTAATGGGTCCAGTTCAGTGTTTCCTTTCAGGGCAACAGATGCAAGAGATCACAGGTACTAG 1383 0.444 MENNNNHHNFKEIITSNSDERGFQGFSAKKSCSKERRDFDLNEPIINTSPEASPPRIDMNLVPNSQVSDDNNCLVAMGGSQPLAPALDFSLAAPTRVTEQVHSSNDAKTVKFPFDLNAKLDEEEPISCSEEARAKVCGGSSETRPATSNETRLPHSASADNIGPLRSFDLEVTPDVPPTNAADNDNEDRASAVEGGSGSESRKRNREEEECEKVPGRAFRGETVAVEIESEKKTIVDDGYRWRKYGQKIIKGNSYPRAYYKCTSAECSVRKHVERDSRNSKNVITTYEGKHNHELPPPKNNNKKQHVDNEDGEDDGREELAAATANAISTFGLPGSLPKPAEPQVHTLTLRNDTNREFATGFLRPNNRFGSFNNNMNIGSSSTPQQMHFSSLNNTNTMPYRSYRRSLDRYATPQPGPSMFPEFPTSPPFNIPPSSGVRLNPNGSSSVFPFRATDARDHRY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1520 460 Gene3D WRKY domain 221 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu7g1520 460 MobiDBLite consensus disorder prediction 432 449 - -
Ssu7g1520 460 SUPERFAMILY WRKY DNA-binding domain 233 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu7g1520 460 MobiDBLite consensus disorder prediction 423 460 - -
Ssu7g1520 460 SMART WRKY_cls 236 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1520 460 ProSiteProfiles WRKY domain profile. 231 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1520 460 MobiDBLite consensus disorder prediction 8 22 - -
Ssu7g1520 460 MobiDBLite consensus disorder prediction 141 156 - -
Ssu7g1520 460 MobiDBLite consensus disorder prediction 292 311 - -
Ssu7g1520 460 MobiDBLite consensus disorder prediction 124 215 - -
Ssu7g1520 460 MobiDBLite consensus disorder prediction 199 215 - -
Ssu7g1520 460 Pfam WRKY DNA -binding domain 237 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1520 460 MobiDBLite consensus disorder prediction 287 317 - -
Ssu7g1520 460 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 103 441 - -
Ssu7g1520 460 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g1520 460 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 441 IPR044810 GO:0003700
Ssu7g1520 460 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1520 Ssu-Chr7 32103507 32108011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1520 236 305 WRKY Transcription Factor Family AT5G56270 52.857 5.81e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu7g1520 WRKY 1.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1520 K18835 - gsj:114371773 329.331