Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1513 ATGATGGGGACTGAGCTTATGAGAATTTGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTAAAGAGggtagaaaacaatgaaaaacaaaatgataaaaatatgacCAGTTGCTCAGCCTCTACAAGTGCTTCTGAATCACCGTCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGATACTGCAAAGGTTCCTAGATCCCGTCGACGAAGACCATGGATTAATTATGGACAATATGAGAACAGTTCAGATGAAGACTCTGACTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTCGGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAgGTTGTTGCCAGATGGCAACCAGAAGATGCTCGTAGGCCAAGTCTTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGgAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCGAGGGCTGAGCCATATGGAATTTGTCGCATTGTTCCACCATCTTCTTGGAAACCTCCTTGTCCTctcaaagaaaaaagtatatggGAGGGTTCTAAATTTGCTACACGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATGTCAAGGATTCAAGGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGACTACCTAATGCAGGATTTTCTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAAGATTTTCAGCTCAAATActttggaaaaaatgaaaatgtatcTCATTTGGGTGCtaatacaacaattttaaatgGTACCTTGGAGCCTTCTGTGGAGAACATTGAAGGTGAATATTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATTTGGAAACTGGGGTTTTTGGAAGTGGTTTCCCAAGCAAATCTAGTCATATTGGTTCCGCTTCACATGAACAATACATAAAATCTGGTTGGAATTTAAATAACTTTGCAAGGCTACCTGGATCTCTGCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTACATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGAGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCCTTCAAATTGGAAGAGGCCATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTGAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTATCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATTGAGCTGTACCAGGAGCAGGGGCGCAAGACTTCTGTATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCCTTTTGGCAAAAGCACTCAAGATGCGTGTTGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTTCTTCACAGGCATTAAAAATGGAGAGTACTTTTGATGCTACAAATGAAAGGGAATGCAGTATTTGCTTTTTTGATTTACACCTATCTGCAGCTGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCCCTTGGGATTCCAAATTTTTCCTCTTTCGGTATGATGTTAGTGAACTAAATATTCTTGTGGAGGCATTGGAAGGAAAATTAAGTGCAATATACAGATGGGCAAAATTAGATCTTGGGCTGGCACTATCTTCTTTTGTCTCAGCAGACAAGGGAACAATACTTAAGGAATTGAAATCGCATTCATCCAATTTGTCTCATTCTTCCAGGGCCACTGTGCATAAAGAGATGGCTTTGCACCcatcaaataaatttgttgatgattcTCAATTGATTGATGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGGAAATCAGCTGAAGCTATTTCATCTTTGAGTTCCATGAAGGAATTGCTAACATTTAAAAGTTCAAAACCTACATCTGAGATTGCTAATCATAAGATCTGTGTTAATAAAGAAGAATCTGTTATTTGCAGATCAAATACGAGAACCCCTGGCTGTCAATTGTCTCAAGAGGATACATCACATGCTTTATCTCTGCCTCTGGCTCAACATGGAGGTGAAAGAAGTTCACTTTACAGAcacaataacaattttatacttCTTAGTGacgatgaagatgatgaaaagATGTCCGATTCAAATAAAAGGAAGGAACTTTCTAATATGCTTGCAGGTCCTAGAGACAAGGCAAGCCCATGTAAcaatgtagaaaataaaaacttgaccATTTCTGTGACAGATACTGCTGTGATGGGTGAAAAGAATGCTATTACATTGCCCCGTGAAAATATGAGTTCTGATTCAACTCAGCTTTTGCATGTGAAACAAGAATATCATGAACACACAGGAACAGTTCTAGCCTCTACCCCAGTAGATCTTTCTTGTCATATGGGTCTTACAAGTACAGAATCTGCTACAAATATTCCAGTTTCTTCAAAAGTAGAGGCCAGTGATCATTGTTTGGAAAGTTTGGAGATTTGTCCTCTGAACCCACAGCATTCTGGCATTAAGGTTAAGACTGAAGATAATCATGAAAGGTTTGGAGGATGTGCCACTTCTAATGTAGGAGACAATGCAAGAGCTGTTAATGGGAACTTTTCTTGTGGTCCAAACAATTACCGTCAGAAAGGTCCTCGGATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCACTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCGGGACGTGGCTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAGTGAGGTCTTCATTCATATGTCAGCTGCAAGATGCTGGGAACTAGTCAGAGAGAAAGTGAATCAAGAAATTGCAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCGCTGGATCGAAGTCGAGTATGTAATGAGTATTGGGACTCACGGCCCTATTCCCGTCCTCAAGGACAGATTTCACAATCATGCCAAACCAGTGGAAATGGTGGAAATGGTCAAGGGGTTCTCTTGAATAAGCCCATGCCCGTTGGAGTTGTTGCAGTACTAAGGAGCCTATTTAATAAGGCTAATGCAGAAGAATTGAACTCATTGTACAGCATTCTTAGTGACAATAGGCCAGCGGCTGACAAGAACCTAATTGCGCAACTTCTCAATGAAGAGATTCACAAATCACAACCGCGATag 3777 0.3979 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQNDKNMTSCSASTSASESPSTQVENDVQVRDTAKVPRSRRRRPWINYGQYENSSDEDSDCERLDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWQPEDARRPSLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRDSMRKMSRIQGNMKRKRRRCTRMGVDNGTRRLPNAGFSEVERFGFEPGPEFTLETFQRYAEDFQLKYFGKNENVSHLGANTTILNGTLEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPSKSSHIGSASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDAFKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSVSHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGLLAKALKMRVEMERARREFLCSSSQALKMESTFDATNERECSICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCPWDSKFFLFRYDVSELNILVEALEGKLSAIYRWAKLDLGLALSSFVSADKGTILKELKSHSSNLSHSSRATVHKEMALHPSNKFVDDSQLIDVPIENQANSKDQSYFQQRKSAEAISSLSSMKELLTFKSSKPTSEIANHKICVNKEESVICRSNTRTPGCQLSQEDTSHALSLPLAQHGGERSSLYRHNNNFILLSDDEDDEKMSDSNKRKELSNMLAGPRDKASPCNNVENKNLTISVTDTAVMGEKNAITLPRENMSSDSTQLLHVKQEYHEHTGTVLASTPVDLSCHMGLTSTESATNIPVSSKVEASDHCLESLEICPLNPQHSGIKVKTEDNHERFGGCATSNVGDNARAVNGNFSCGPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPQGQISQSCQTSGNGGNGQGVLLNKPMPVGVVAVLRSLFNKANAEELNSLYSILSDNRPAADKNLIAQLLNEEIHKSQPR 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1513 1258 Pfam jmjN domain 149 182 IPR003349 -
Ssu7g1513 1258 Gene3D - 1031 1168 - -
Ssu7g1513 1258 SUPERFAMILY Clavaminate synthase-like 358 550 - -
Ssu7g1513 1258 Gene3D Cupin 133 507 - -
Ssu7g1513 1258 MobiDBLite consensus disorder prediction 1176 1198 - -
Ssu7g1513 1258 Pfam F/Y-rich N-terminus 1037 1079 IPR003888 GO:0005634
Ssu7g1513 1258 SMART cupin_9 360 523 IPR003347 -
Ssu7g1513 1258 PANTHER JUMONJI 14-RELATED 72 736 - -
Ssu7g1513 1258 PANTHER JUMONJI 14-RELATED 1012 1255 - -
Ssu7g1513 1258 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Ssu7g1513 1258 MobiDBLite consensus disorder prediction 43 69 - -
Ssu7g1513 1258 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Ssu7g1513 1258 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Ssu7g1513 1258 SMART JmjN_1 147 188 IPR003349 -
Ssu7g1513 1258 SMART fyrn_3 1038 1082 IPR003888 GO:0005634
Ssu7g1513 1258 MobiDBLite consensus disorder prediction 1176 1197 - -
Ssu7g1513 1258 SMART fyrc_3 1088 1182 IPR003889 GO:0005634
Ssu7g1513 1258 Coils Coil 570 590 - -
Ssu7g1513 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 72 736 - -
Ssu7g1513 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1012 1255 - -
Ssu7g1513 1258 MobiDBLite consensus disorder prediction 847 876 - -
Ssu7g1513 1258 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Ssu7g1513 1258 ProSiteProfiles FYR domain FYRN motif profile. 1024 1082 IPR003888 GO:0005634
Ssu7g1513 1258 MobiDBLite consensus disorder prediction 36 81 - -
Ssu7g1513 1258 Pfam F/Y rich C-terminus 1087 1170 IPR003889 GO:0005634
Ssu7g1513 1258 ProSiteProfiles FYR domain FYRC motif profile. 1084 1174 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1513 Ssu-Chr7 31942331 31951545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1513 2 1253 JUMONJI Transcription Factor Family AT1G08620 55.903 0.0 1286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu7g1513 JmjC 1.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1513 - - gmx:100800271 2326.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1513 7 31942331 31951545 Ssu7g1513 7 31942331 31951545 ECH