Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1486 atgtgtgatttaacAGGACAGATTTACAAGGATCCAGGTGCATCAGCATCTGAGCTAGTGGCAATTGCACTAGCTCATGCGTTTGCTCTATTTGCTGCAATTTCTGCTAGCATGCATGTGTCTGGTGGACACGTCAACCCTGCCGTCACTTTCGGTGCTCTTCTTGGTGGAAGGATCTCCGTCCTTAGAGCCCTTTACTATTGGGTTGCTCAACTTCTGGGTTCTGTAGTCGCTGCCCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCACAGGGGTTCAGTGTGGCGATCGGCCTTGGAGCGTTTCACGGCCTTATACTGGAGATTGCCCTGACATTTGGTCTGATGTACACAGTCTATGCTACTGCTATTGATCCTAAAAGGGGCACCATTGGCACAATTGCACCCTTAGCCATTGCACTCGTTGTTGGGGCAAACGTTCTCGTTGGCGGGCCGTTTGATGGAGCATGCATGAACCCTGCTCGGGCATTTGGGCCTGCCTTGGTGAGCTGGAGATGGCACTACCACTGGATCTTCTGGGTGGGTCCATTGATTGGGGCTGCCCTGGCAGCACTGCTCTATGAATACATTATGGTCCCAATTGAGCCTCCTCATCACCAACCTTTGGCTCCTGAAGATTACTAG 648 0.5046 MCDLTGQIYKDPGASASELVAIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVLRALYYWVAQLLGSVVAALLLRLVTNNMRPQGFSVAIGLGAFHGLILEIALTFGLMYTVYATAIDPKRGTIGTIAPLAIALVVGANVLVGGPFDGACMNPARAFGPALVSWRWHYHWIFWVGPLIGAALAALLYEYIMVPIEPPHHQPLAPEDY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1486 215 Pfam Major intrinsic protein 14 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 Gene3D Glycerol uptake facilitator protein. 3 203 IPR023271 -
Ssu7g1486 215 PRINTS Major intrinsic protein family signature 178 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 PRINTS Major intrinsic protein family signature 108 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 PRINTS Major intrinsic protein family signature 141 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 PRINTS Major intrinsic protein family signature 63 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 PRINTS Major intrinsic protein family signature 26 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 ProSitePatterns MIP family signature. 44 52 IPR022357 -
Ssu7g1486 215 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 7 215 - -
Ssu7g1486 215 TIGRFAM MIP: MIP family channel proteins 17 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 CDD MIP 34 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1486 215 SUPERFAMILY Aquaporin-like 10 206 IPR023271 -
Ssu7g1486 215 PANTHER AQUAPORIN-8 7 215 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1486 Ssu-Chr7 31496106 31497215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1486 34 215 Major Intrinsic Protein MIP AT1G73190 70.745 1.39e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1486 K09873 - gmx:100797632 367.466