Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1485 ATGGCAACTCGAAGATATGAGTTTGGAAGGTCGGATGAGGCTAACCATCCAGACACCATGAGAGCCACCTTGGCTGAATTTCTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTATGCGACAGATTTACAAGGATCCAGGTGCATCAGCATCTGAGCTAGTGGTAATTGCACTAGCTCATGCGTTTGCTCTATTTGCTGCTATTTCTGCTAGCATGCATGTGTCTGGTGGACACGTCAACCCTGCCGTCACTTTCGGTGCTCTTCTTGGTGGAAGGATCTCCGTCCTTAGAGCCCTTTACTATTGGGTTGCTCAACTTCTGGGTTCTGTAGTCGCTGCCCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCACAGGGGTTCAGTGTGGCGATCGGCCTTGGAGCGTTTCACGGCCTTATACTGGAGGTTGCCCTGACATTTGGTCTGATGTACACAGTCTATGCTACTGCTATTGATCCTAAAAGGGGCACCATTGGCACAATTGCACCCTTAGCCATTGCACTCGTTGTTGGGGCAAACATTCTCGCTGGTGGGCCGTTTGATGGAGCATGCATGAACCCCGCTCGGGCTTTTGGGCCTGCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTTCTGGGTGGGTCCATTGATTGGGGCCGCCCTGGCAGCGCTCATCTATGAATACATTATGGTCCCAATTGAGCCTCCTCATCACCAACCTTTGGCTCCTGAAGATTACTAG 765 0.515 MATRRYEFGRSDEANHPDTMRATLAEFLSTCIFVFAGEGSALAMRQIYKDPGASASELVVIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVLRALYYWVAQLLGSVVAALLLRLVTNNMRPQGFSVAIGLGAFHGLILEVALTFGLMYTVYATAIDPKRGTIGTIAPLAIALVVGANILAGGPFDGACMNPARAFGPALVGWRWHYHWIFWVGPLIGAALAALIYEYIMVPIEPPHHQPLAPEDY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1485 254 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 254 - -
Ssu7g1485 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Ssu7g1485 254 PANTHER AQUAPORIN-8 1 254 IPR034294 -
Ssu7g1485 254 SUPERFAMILY Aquaporin-like 14 245 IPR023271 -
Ssu7g1485 254 Gene3D Glycerol uptake facilitator protein. 5 242 IPR023271 -
Ssu7g1485 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g1485 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1485 Ssu-Chr7 31485112 31486649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1485 2 254 Major Intrinsic Protein MIP AT1G73190 67.803 8.85e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1485 K09873 - gmx:100797632 454.521