Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1466 ATGGAGTCTAGCAAATTTCATGGTGAGAAAAGGGcagataaaaagataataatatacaaGGAATGTCTGAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGGTGTGGTGAGTTCATGGCTGCTGGAGAAGAAGGCACCCTTGATGTTCTCAAGTGCTCAGCTTGCAATTGCCACAGAAACTTTCACAGAAAAGAGATAGAGTCATCTGATTCCAATTCCCCTCCTCTGATGGTTATTCCTGATACTACTCAGATAATAAGGCCAATTTCGGCTCATTTATCTCCCAACAAAAGTGGCTCAATTAGTCCTTCTGATCAGACTGATGAGAAGGACTATGAAGATGGGGTGATTAAGAAGGTGGAAAATCCAACTGAAAAGGTGAAGAAGAGGTTCAGAACCAAGTTCACACAAGAACAGAAGGAGAAGATGTTGGGTTTTGCAGTAAGGGCAGGGTGGAGGATACAGAAGCTAGAGGAATCTGTGGTTCACAAGGTTTGCCAAGAGATTGGAATCAAGAGAAGAGTCCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGTCAAGAGAAATCCCTCCACTAGCTAG 597 0.4204 MESSKFHGEKRADKKIIIYKECLKNHAAAIGGNATDGCGEFMAAGEEGTLDVLKCSACNCHRNFHRKEIESSDSNSPPLMVIPDTTQIIRPISAHLSPNKSGSISPSDQTDEKDYEDGVIKKVENPTEKVKKRFRTKFTQEQKEKMLGFAVRAGWRIQKLEESVVHKVCQEIGIKRRVLKVWMHNNKNTFVKRNPSTS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1466 198 Gene3D - 120 191 - -
Ssu7g1466 198 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Ssu7g1466 198 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 69 IPR006456 -
Ssu7g1466 198 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 131 188 IPR006455 -
Ssu7g1466 198 SUPERFAMILY Homeodomain-like 128 191 IPR009057 -
Ssu7g1466 198 MobiDBLite consensus disorder prediction 94 115 - -
Ssu7g1466 198 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Ssu7g1466 198 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 194 - -
Ssu7g1466 198 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1466 Ssu-Chr7 31153166 31153762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1466 14 194 ZF-HD Transcription Factor Family AT1G14440 52.284 4.22e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu7g1466 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1466 - - gmx:100793926 350.132