Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1464 ATGCTCTCTATCTTCAGATGCAAGTCGTGCAACCATGTGACTACCACTGATGATGTCGAAGACTGGGTATACCACCAATTAGAGAACACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAAATTTCTTTCAGGTTGTCATATTATGGATTTCTGGGATCGTCTGTGCAAGACTCTCGGAGTTAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATACGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACATCCATGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACATGAAGCATACAAGTTTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCGCCTTTTCCCAGGGACAGGTGCCCCACTCCCGTGTGCAGGACATGATCTCATATTACCAGTCTTTGTCAGAGCATAAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATGATGGGTTTGATTGGTGATGCTCGCAAGACTGCATCAAATGTTAATGACACAACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGAGTGACATAGAACGTGTGGAGCAAGCCATGGTCAGAGTGCTGCGTGCAGTGTCCCAGTCTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGCCAGCAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCGAACAATAATTCTTCAGGCTCGAAGTATCCTTCTGAAGAAAACCTCCTACAATGCTTAAGATATTTATATGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGTTGAAGCAGGGACAAGGACTGTTGCAATGAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGATGTTGCCATTGTCAGATTTGCAGAAGTTACGGATCTCATGTCAGATTGAACTTGTAGATGAATCTGAAAATTCAGAATCTATAATTCCACCAGAATTAATTGTGCTGCCCATGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAGCAAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTGGATGAGCTACTTGGCTATAGCGGTGTTGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTACGAGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAACGGGGACTCGAGAGGTGGACTGTAGATTGTAGCTGTGGGGCTAAGGATGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTGAAATGCCAAAACTGTGAATCAAAACCCAAATCTAGTGGGCACTGCAAAGATGAGACTGTGACTAACGTTCGTACTAGTGGTAGTTGCTTCGGAAACGGCTTGCCAGTGCCATCTGATGTTCGTTAA 1686 0.4466 MLSIFRCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKFAVESLSNLPLSAFSQGQVPHSRVQDMISYYQSLSEHKLVNIRDLFCFMMGLIGDARKTASNVNDTTCKKRRFNASGLSISWEKSDIERVEQAMVRVLRAVSQSKWVSWRALRGAASKVASPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEAATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTVAMSSAQKLFDCKQFVKDYSPEMLPLSDLQKLRISCQIELVDESENSESIIPPELIVLPMNATVAELKNQAANAFQDVYLMFRRFQVDELLGYSGVDDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNCESKPKSSGHCKDETVTNVRTSGSCFGNGLPVPSDVR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1464 561 SUPERFAMILY FYVE/PHD zinc finger 466 524 IPR011011 -
Ssu7g1464 561 CDD PHD_MMD1_like 477 522 - -
Ssu7g1464 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 529 IPR013083 -
Ssu7g1464 561 Pfam PHD-finger 478 525 IPR019787 -
Ssu7g1464 561 PANTHER OS01G0877500 PROTEIN 3 533 - -
Ssu7g1464 561 ProSitePatterns Uncharacterized protein family UPF0054 signature. 35 45 IPR020549 -
Ssu7g1464 561 SMART PHD_3 477 523 IPR001965 -
Ssu7g1464 561 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 3 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1464 Ssu-Chr7 31111331 31113932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1464 25 522 PHD Transcription Factor Family AT5G22260 32.519 4.02e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu7g1464 PHD 4.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1464 - - gmx:100818189 1048.5