Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1444 ATGGAGGGAAGAGAGAATTTTGGTGTTGTGGTGGGTGATGAAGCCCCAGCGAGCTTCCATGTGGCTCCTAGAATTGAGAACAACTTGGACTTTTCAAGGGCCGCCGTGCCGGCGCCGGCGACGAAggtgaagaagaagagaggGAGGCCGAGGAAGTATGGGCCGGATGGGAAGGTGGCGTTGGGGCCGGTGGCGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGCAGAGGGAGGCCTATTGAATCTATCAAGAAGTCATCGTTTAAGTTTGAAGTTGAAGGCCCTGGACCAGGTGAGGGAATTGCATACTCAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCTGGCGAGGATGTCACTATGAAGATTATGTCCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCAGCAACTGGGACAATTTCAAATGTTACACTTCGCCAACCATCGTCTTGTGGGGGGACTTTAACGTATGAGGGACGGTTTGAGATTCTCTCCTTGTCAGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCTGGTCCAGATGGTCGAGTAATGGGGGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCAGTGCAGGTTGTGGTGGGCAGTTTTCTTCCTGGTCATCAGTTGGAGCATAAACCCAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTACACCTGTTAATCTTTTCTCTAATGAGGAAATAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTTTAACAATGGTCAAGACTCTAGGAACTTATCTGCTGATGATAAAGATCCTTTAACTGAAAAGGAGTCTAACCTAAGTCAATCAAATGCTGACGCTGCATGCTAA 987 0.4732 MEGRENFGVVVGDEAPASFHVAPRIENNLDFSRAAVPAPATKVKKKRGRPRKYGPDGKVALGPVAALSPMPISSSIPLTGEFSAWKRGRGRPIESIKKSSFKFEVEGPGPGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKPKKQRVEHISTITPTPVNLFSNEEIKVSFGGVKPIMTPAAFQEENIASFNNGQDSRNLSADDKDPLTEKESNLSQSNADAAC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1444 328 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
Ssu7g1444 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 314 - -
Ssu7g1444 328 MobiDBLite consensus disorder prediction 295 328 - -
Ssu7g1444 328 ProSiteProfiles PPC domain profile profile. 119 261 IPR005175 -
Ssu7g1444 328 CDD DUF296 123 237 IPR005175 -
Ssu7g1444 328 Gene3D - 124 257 - -
Ssu7g1444 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 314 IPR039605 GO:0003680
Ssu7g1444 328 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1444 Ssu-Chr7 30914346 30919352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1444 43 297 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 55.137 4.71e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1444 - - gmx:100776862 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1444 7 30914346 30919352 Ssu7g1444 7 30914346 30919352 ECH
Ssu7g1444 7 30914346 30919352 Ssu7g1444 7 30914346 30919352 PCT