Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1427 ATGGCAAAAGCCATAGTTAATTTGGAGTTGAATGATTCAAACTTGAAACTCCTTGGCAAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGCAGTGTTGAATCAAAAGACTTGTCATTGTCAGCCCTGGTTAAATTAGCAGGATCTCATGTCAATAAGGGAATTATCGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGTCACGTGCTTTCATTGTCATTAAATGCTCTGAAATCATAGAGAAGCTTTCTTCAGATGGTGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCTTTGCAGCAGAGTTCCAACTCAGGTCACAACATCCGTAAGCCTGCACTACGTGCACTTCTTGGCATTTGCAAATTTGAGTCTGGTTTGGTCAAGAAAGCAATTCTTGCAGCCAATGGTGTGTCTCTAATTCTTCCACTTCTTGATGACTCTGACTCAGAAATCAGGGAGACTTCCATAATTCtgctctttcttttctctcaacatGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTGGAAGCCTTGATTGGATTTCTTGAGAATGAAGACAATGATAATGTACAGATGGCTGCTGCTGGTTTACTGGCTAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAGCTGGGTGGACTTGATGCAATCATAAGCATTTTGAAAAGTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATCGAGTCACAGCGAGATTTGGTTAAACGCGGAATATATCCTTTGCTTGTAAATTTTCTTAACACTGGTTCAGTCACGGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTCCCAAACCAACTGGTTGCTGGCTTTTCAGATCATCACGTGTTCCTTTATGTCCAGCACATGGGAGTGTATGCACTGTGAACACCACATTTTGTCTGTTGGAAGCAAAGGCTTTAACTGGCTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTCTCCACATTGGTTTTGGAAGACTTTCCTCAAGGGGGTGCTCGTGTCTTGCATGAGTCAAATGCAATGAGATCCATATTGGACATTTTGAATTGGGGAACTGATTCTCTAAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCCAGATCACGTCTAATTGGTTTGACTGGCATGAATATATATGGGGATGGCCACCTCAGGAGAAAGGCTGCCAAGGTACTATCATTGCTTGAACGCTATTCGAAGTCGTCATCATCTGCAATCTCAGGAGTTCTGGAGTGA 1473 0.4202 MAKAIVNLELNDSNLKLLGKEGVIPPLLEMLSGSVESKDLSLSALVKLAGSHVNKGIIAASGGVPLILDLMFSPRSRAFIVIKCSEIIEKLSSDGDGIDFFVDGEGKQLELDSIITNLLALQQSSNSGHNIRKPALRALLGICKFESGLVKKAILAANGVSLILPLLDDSDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENEDNDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKSGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSSRVPLCPAHGSVCTVNTTFCLLEAKALTGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQGGARVLHESNAMRSILDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1427 490 Gene3D - 1 106 IPR011989 -
Ssu7g1427 490 Gene3D - 107 485 IPR011989 -
Ssu7g1427 490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 487 - -
Ssu7g1427 490 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 201 229 IPR000225 GO:0005515
Ssu7g1427 490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 487 - -
Ssu7g1427 490 SMART arm_5 147 187 IPR000225 GO:0005515
Ssu7g1427 490 SMART arm_5 233 273 IPR000225 GO:0005515
Ssu7g1427 490 SMART arm_5 189 231 IPR000225 GO:0005515
Ssu7g1427 490 SMART arm_5 276 316 IPR000225 GO:0005515
Ssu7g1427 490 SMART arm_5 51 93 IPR000225 GO:0005515
Ssu7g1427 490 SMART arm_5 11 50 IPR000225 GO:0005515
Ssu7g1427 490 SUPERFAMILY ARM repeat 2 103 IPR016024 -
Ssu7g1427 490 SUPERFAMILY ARM repeat 111 478 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1427 Ssu-Chr7 30657718 30659190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1427 3 445 U-box Gene Family AT1G76390 26.365 2.94e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1427 - - gmx:100783638 871.307