Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1426 ATGAAGATTTTGATAACTTTGACGGATACTGTAGAGGGGAATGCAAGAAATAAGgagaAAGTGGCTGAATCTCAAGGATGGGATCACATTATTTCCTGCTTAGGGAGTGACTCTAGCATTTCAGAGGCAGCAATTGATTTGCTATATGAGTTACTTCAAGAACAATCTGGTTGGAATCAATATCTCTGCAAAAAGCTTTCTGAAAATCGTACTGCAGTTTGTTCCCTTGTCGCCCTTCTAAAGAATCCATTCAACCATTCTGCTGAGGTAGCAGAAAAGATTTTGATGAAGCTTTTTGAACTAAATGAGGAAACCATTGCTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTCAAGGTAAGAAGATGGATTATTTTCAAGTTGTAACATGTTTATTGTGA 417 0.3693 MKILITLTDTVEGNARNKEKVAESQGWDHIISCLGSDSSISEAAIDLLYELLQEQSGWNQYLCKKLSENRTAVCSLVALLKNPFNHSAEVAEKILMKLFELNEETIAIAANFGWYKPLVDRMIQGKKMDYFQVVTCLL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1426 138 Gene3D - 1 137 IPR011989 -
Ssu7g1426 138 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 130 - -
Ssu7g1426 138 SUPERFAMILY ARM repeat 5 124 IPR016024 -
Ssu7g1426 138 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1426 Ssu-Chr7 30656277 30657075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1426 2 125 U-box Gene Family AT1G20780 32.283 1.12e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1426 - - gmx:100783638 211.846