Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1425 ATGGCAGGATTGGAACTCATACCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTCCTGAAAACGGCTCACGCAGCATCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGACTCTCAAGCAGCAAGGGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTTGACAAGTATAAGAACCGTGGCCGTTTTTACTTGCTGGTTAAGTGCCGATCCATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAATACCGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGACTACAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGATTCAAATTGTCGACAAGTTGAACCAGGCACTTAGAGAGCAGAAACTTGATCAGGCTTTTGCAAATGACATGCTAGAGGAGATATCAAGGGCAGTTGGAGTGCCTGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGagggaaaaagaagaagctgcCGACAGGAAAGAAAGAGCTGAATGTGTTTTTTTGGAGCAGATAATTCAGTTACTCTCTCGAGCTGATGCAGCAAGGGATTATGAAGAAGTGGAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAGAAATATATTCCCCCACTCAATCCTTTCCTTTGTTCTATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCTATTAAAGCTTGGTTTGAAGATGGCAACAGGACAGACCCAGAAACTAAAGAGGTTCTTGAAGACACTACCTTTGGGTCTAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTGGTAATAAGGTCTATCAGggaaaatttattatcatattctGACCTGAAAGAATCCCTGAGCCAAATGCAGGCTCTAGTAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGATCTTACTGATATTGTTATCTCTATCCTTGGGAGCTCGATGACAGAGAAGTGA 1173 0.4007 MAGLELIPIGTILTVVTNQVLKTAHAASDVLIGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVDKYKNRGRFYLLVKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDKLNQALREQKLDQAFANDMLEEISRAVGVPVEPSEISKELASIRREKEEAADRKERAECVFLEQIIQLLSRADAARDYEEVERQYFERVKVIERYDSREKYIPPLNPFLCSITGAVMVDPVSLCTGTTCERSAIKAWFEDGNRTDPETKEVLEDTTFGSNIPLRQSIEEWRELNYCLVIRSIRENLLSYSDLKESLSQMQALVRENSINKDWISIGDLTDIVISILGSSMTEK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1425 390 Pfam MCAfunc domain 24 155 IPR045766 -
Ssu7g1425 390 Coils Coil 127 154 - -
Ssu7g1425 390 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Ssu7g1425 390 Coils Coil 62 89 - -
Ssu7g1425 390 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 388 - -
Ssu7g1425 390 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Ssu7g1425 390 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 388 - -
Ssu7g1425 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 334 IPR013083 -
Ssu7g1425 390 Coils Coil 197 217 - -
Ssu7g1425 390 SUPERFAMILY RING/U-box 249 330 - -
Ssu7g1425 390 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Ssu7g1425 390 Gene3D - 6 124 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1425 Ssu-Chr7 30655102 30656274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1425 220 383 U-box Gene Family AT5G42340 28.022 1.24e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1425 - - gmx:100783638 676.011