Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1424 ATGGAACCGCCATTGCAGCAACCACAGGCACAGCCGCCGCGCACCGCCAACATCCTCGGAAAATACCAGCTGACGCGCCTCCTTGGCCGCGGCAGCTTCGCCAAGGTCTACCAGGCGCGATCCCTCGTCGACGGCGCCACCGTCGCCGTCAAAATCATCGACAAATCGAGAACCGTTGACGCCGGCATGGAGCCCCGCATAATCCGCGAGATCGACGCCATGcgtcgcctccaccaccacccgAACATCCTCCGAATCCACGAGGTGATGGCCACGAAGACGAAGATACACCTCGTCGTGGAGTTCGCAGCCGGCGGCGAGCTCTTCGCGAGAATCACCCGGCGGGGGCGGCTGCCGGAGCCCACGGCCCGGCGGTACTTCCAGCAGCTGGTCTCCGCGCTCCGCTTCTGCCACCGCAACGGCGTGGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGGCGCCGGCAACCTCAAGGTCTCCGACTTCGGGCTCTCCGCGCTGCCGGAGCAGCTCAACAACGGCCTCCTCCACACCGCGTGCGGCACGCCGGCGTACACCGCGCCGGAGATCCTCCGCCGCAGCGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATCCTCTACGTCTTCCTCGCTGGCCACCTCCCCTTCGACGACTCCAACATTCCGGCCATGTGCAAGAAGATTTCCCGAAGAGATTACCACTTCCCGGACTGGATCACGAAACCGGCCCGTTTTGTTATCCACCGGTTACTGGACCCGAACCCGGAAACCCGAATGGGCCTGGAGGCCCTTTTCGCGAACGCGTGGTTTAAGAAATCGCTGAGACCGGAAACGACGGAGGAAAGGGCGTTCGCGTGGGATaatactaataacaataataataatgtttatgGGAAGGGTTCGGGTGTGAACGCGTTTGATATAATATCGATGTCTTCGGGTTTGGATTTGAGGGGGTTGTTCGAAACGACGTCGGATGGGGGGAACAGGTGGGAGAAGAGGTTCACTTCGAGTGCGagggtggaggtggtggtggagaaGGTGAAGGAGGTGGGTGGGGCTTCGGGGTTTAAGGTTGAGGTTGGGAAGAACAACGGTGCAATTGCGTTGGCGAAGGGGAAGGTGGGTTTGGTGTTTGAGGTGCTTGAGATTGTGCCTGATGAGCTTCTTTTGGTGGCTGTGAAGGTGGTGGAGGGTGGGTTGGAGTTTGAGGAGCATCACTGGGGGGATTGGAAAGCTGCGTTGCAAGATCTCGTGCTTTCTTGGCACAACGAATCCTGA 1305 0.5793 MEPPLQQPQAQPPRTANILGKYQLTRLLGRGSFAKVYQARSLVDGATVAVKIIDKSRTVDAGMEPRIIREIDAMRRLHHHPNILRIHEVMATKTKIHLVVEFAAGGELFARITRRGRLPEPTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGAGNLKVSDFGLSALPEQLNNGLLHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILYVFLAGHLPFDDSNIPAMCKKISRRDYHFPDWITKPARFVIHRLLDPNPETRMGLEALFANAWFKKSLRPETTEERAFAWDNTNNNNNNVYGKGSGVNAFDIISMSSGLDLRGLFETTSDGGNRWEKRFTSSARVEVVVEKVKEVGGASGFKVEVGKNNGAIALAKGKVGLVFEVLEIVPDELLLVAVKVVEGGLEFEEHHWGDWKAALQDLVLSWHNES 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1424 434 CDD CIPK_C 312 424 - -
Ssu7g1424 434 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
Ssu7g1424 434 Pfam Protein kinase domain 22 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1424 434 ProSiteProfiles Protein kinase domain profile. 22 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1424 434 Gene3D Kinase associated domain 1, KA1 313 428 - -
Ssu7g1424 434 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 14 432 - -
Ssu7g1424 434 Pfam NAF domain 311 368 IPR004041 GO:0007165
Ssu7g1424 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Ssu7g1424 434 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Ssu7g1424 434 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Ssu7g1424 434 PANTHER SERINE/THREONINE KINASE 14 432 - -
Ssu7g1424 434 Gene3D Transferase(Phosphotransferase) domain 1 13 312 - -
Ssu7g1424 434 SMART serkin_6 22 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1424 Ssu-Chr7 30624500 30625804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1424 1 432 CBL-interacting serine-threonine protein kinases AT4G14580 56.881 3.42e-166 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu7g1424 Pkinase 4.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1424 K12761 - gmx:100784173 716.072