Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1420 ATGGAAAGCACTGTGACATATGAGAATGATCTCAACCTCAAGGCAACAGAACTCAGATTGGGGCTGCCAGGGACAGAGGAAAATGAGGAAAAAGCACTGCCTGCAGGTGTTAGATCCAACAAAAGGCCATTGACCGAAACTTCTGAAGAGTGTGGTTCAAAGGGCTCTAATGCTCAACATGTGGAAGCTGATGTAGCCCCTCCTACCAAGGCTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTCAGGAGAATGAGGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTTAGAAAGATAGACTTGAAGGTCTATGGAGGCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCTGACTATGCACCTACATATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAGGCCAGGGGTTTGGGTTGTGGTGTATGA 576 0.4583 MESTVTYENDLNLKATELRLGLPGTEENEEKALPAGVRSNKRPLTETSEECGSKGSNAQHVEADVAPPTKAKIVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1420 191 ProSiteProfiles PB1 domain profile. 94 181 IPR000270 GO:0005515
Ssu7g1420 191 PANTHER AUXIN-INDUCED PROTEIN 10 188 - -
Ssu7g1420 191 SUPERFAMILY CAD & PB1 domains 84 180 - -
Ssu7g1420 191 MobiDBLite consensus disorder prediction 21 56 - -
Ssu7g1420 191 Pfam AUX/IAA family 53 188 IPR033389 -
Ssu7g1420 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 188 IPR003311 GO:0005634|GO:0006355
Ssu7g1420 191 Gene3D - 88 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1420 Ssu-Chr7 30512162 30513086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1420 97 187 B3 DNA Binding Superfamily AT2G46530 37.363 2.84e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu7g1420 AUX_IAA 1.4e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1420 K14484 - gmx:100527777 336.265