Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1419 ATGGCAACTATGCTGGCAAAGGAGCATGGTCTGAACCTCAAGGAGACTGAGCTTTGCCTCGGTTTGCCTGGTGGCGGTGGCGGCGGCGGTGTCGGTGGCGGGGGCGGCGGCTCTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAGTCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTCAAGGATCCTGCCAAGCCACCCGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGACACAGAAGGTTAGCACTGAGGATAGCGCTGAGAAGACAACAAGCAGCACTGCTTCTGGGGCATTTGTTAAAGTTTCCATGGACGGAGCACCTTACCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGAGGCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTCGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 738 0.5041 MATMLAKEHGLNLKETELCLGLPGGGGGGGVGGGGGGSEVETPRATGKRGFSETVDLKLNLQSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMTQKVSTEDSAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKELSEALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1419 245 Coils Coil 57 77 - -
Ssu7g1419 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Ssu7g1419 245 Gene3D - 121 239 - -
Ssu7g1419 245 MobiDBLite consensus disorder prediction 21 53 - -
Ssu7g1419 245 Pfam AUX/IAA family 45 236 IPR033389 -
Ssu7g1419 245 SUPERFAMILY CAD & PB1 domains 123 226 - -
Ssu7g1419 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 6 238 - -
Ssu7g1419 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 238 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1419 Ssu-Chr7 30442872 30444958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1419 109 230 B3 DNA Binding Superfamily AT2G46530 30.328 4.66e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu7g1419 AUX_IAA 2.4e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1419 K14484 - gmx:100810762 444.891