Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1417 ATGAACAGGACAGATCGTGGTCTGCAAGGTTTGAGGGAGAAAATTTTTCCTTGTGAAGGACAAAATGTTAAGACACCTAACAATGTTCCTTCAGTCAAATTGataatcaaaagaaagaagaaatctcTCTCTTCATTAAAAGCCAAAGCAAGAATAGCCAAAGCTGCCACAAGAAAAGTTTTCATTGCAAAGAAATCAGATTTTTCAGCTCTTAAACCTGATAAAGTGAAAGATGTTAAGGAAGATGAAAACCACGGTGGGGTAGAAGTTCCAGAAGAAGTTTCTACGATTGGATCTGCAAGAAGAGCAAAAGCTGCAgcaagaataaaatttattcgaTCTGCTCCACCCCCTACTTGTCAACTTGACAAAGTAACaggagaaggaaagaaagatgATGATCGTCCGCGGGTTGGAACTTCCAATGGAACTCTCAAAATCAGAATTCCGAAGTcttcaaaaccaaattcaaGTCAACAAATAGAGGCCAACAAGATTTCAAGGGACAATGCTGAGTTAAGGAATGAAAAGACTGATATGTCTGAGCCATTAAATTGCCTGGTGGAAGCTTCAAGCAAATACAAATCTCGTAATAAGTCCACCATGCAAGAAAATGGTGTCACTCCAGTACTTGTGCACTCTAATGACAATGACCCTCTGGTGCATAAGGTCGAAATCAACAAACGTTGTCACAGAACAAACGCTGCTGGTGATCAAAATGAGTCAGCTCCTTCAGAATCAGATTCAGTCAAACGTCAAAGGCTTCTGAGCACCCAAGAAAAAACACCTAAAATCTCTGAGGACTTGAATTTTCCAGCACAACCTGAGATTGGTTCAAACAGTGAAAGCAATAAAGAATTTGGTCCAATCTGGTTCTGCTTGGTTGCTGCTGAAGAGAAGAAAGAAAGTGCACGATTGCCACAAATATCTTCCTGCTATCTAAGGGTCAAGGATGGTAGTGTACCTGTTTCCTATATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACTGAGGTGGAGATCACATTACTAGGTCAGCCAGTTTTATCTTCACTCCAACTGAAAAACTTAGTAGAGATGTGGTTGCAAACAGCGCCAACGAATGAGATTCAGACATCTGTTGGAAGCTCAGCTAAGGATTTTATTATGGTCCTTTCATATGGTCGACAGGCTTGA 1185 0.3823 MNRTDRGLQGLREKIFPCEGQNVKTPNNVPSVKLIIKRKKKSLSSLKAKARIAKAATRKVFIAKKSDFSALKPDKVKDVKEDENHGGVEVPEEVSTIGSARRAKAAARIKFIRSAPPPTCQLDKVTGEGKKDDDRPRVGTSNGTLKIRIPKSSKPNSSQQIEANKISRDNAELRNEKTDMSEPLNCLVEASSKYKSRNKSTMQENGVTPVLVHSNDNDPLVHKVEINKRCHRTNAAGDQNESAPSESDSVKRQRLLSTQEKTPKISEDLNFPAQPEIGSNSESNKEFGPIWFCLVAAEEKKESARLPQISSCYLRVKDGSVPVSYIKKYLVKKLGLASETEVEITLLGQPVLSSLQLKNLVEMWLQTAPTNEIQTSVGSSAKDFIMVLSYGRQA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1417 394 MobiDBLite consensus disorder prediction 125 139 - -
Ssu7g1417 394 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 3 393 - -
Ssu7g1417 394 Coils Coil 156 176 - -
Ssu7g1417 394 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 393 IPR044807 GO:0004842
Ssu7g1417 394 MobiDBLite consensus disorder prediction 118 170 - -
Ssu7g1417 394 MobiDBLite consensus disorder prediction 145 166 - -
Ssu7g1417 394 MobiDBLite consensus disorder prediction 233 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1417 Ssu-Chr7 30394059 30395869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1417 306 391 C3H Transcription Factor Family AT3G23060 57.471 3.31e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1417 K16277 - gmx:102669950 378.637