Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1412 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGTTTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACATCTTACATCGAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGCCTATTAAGGTGTGGGAAGAGCTGCAGACTGCGCTGGATTAACTATTTGAGGCCTGGTATCAAGAGAGGGAATTTCACAACTGAAGAAGAGGAAACTGTCATTAAGCTGCACGAGATGCTGGGCAACAGGTGGTCAGCAATTGCAGCGAAATTGTCAGGAAGAACTGACaacgaaataaaaaatgtgtggcACACCAATTTGAAGAAGAGGCTGCTGAAAACAGACCATCCCAATCCTAAAGCCAAAAGACTCACTAAGCCAAAAATTAAACGTTCTGATTCCAACTCCAGCGTCATAACTCAATCAGAACCTGCCAATCTTAATTTCATAGAAATGGAGACCACATCAGCATGCACTACTTCTAGTGATTTTTCCTCGGTCACGATTGGTGATAGCAAAAATATCAAGAGTGTGGACATACAGTCTCTGGAGACAATGCCTGTGATTGACGAGAGCTTTTGGTCAGAAGCTGCAACAGATGAAACACCCACCATGTCATCACAATCTTTGACAATCTCAAATGAGATGCCACTCCAATACCCTTTTACTAACTGTGAGGAAATTTTCCAACAGAGTCATGCTTATGATTCAAACTTTGATGACGGCATGGATTTCTGGTATGACATATTCAGCAGGACCGCGGATTCAATAGAATTGCCAGAGTTCTGA 804 0.4291 MVRAPCCEKMGLKKGPWAPEEDQILTSYIEKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPGIKRGNFTTEEEETVIKLHEMLGNRWSAIAAKLSGRTDNEIKNVWHTNLKKRLLKTDHPNPKAKRLTKPKIKRSDSNSSVITQSEPANLNFIEMETTSACTTSSDFSSVTIGDSKNIKSVDIQSLETMPVIDESFWSEAATDETPTMSSQSLTISNEMPLQYPFTNCEEIFQQSHAYDSNFDDGMDFWYDIFSRTADSIELPEF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1412 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g1412 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu7g1412 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g1412 267 CDD SANT 69 112 IPR001005 -
Ssu7g1412 267 CDD SANT 16 61 IPR001005 -
Ssu7g1412 267 SMART sant 13 63 IPR001005 -
Ssu7g1412 267 SMART sant 66 114 IPR001005 -
Ssu7g1412 267 MobiDBLite consensus disorder prediction 122 142 - -
Ssu7g1412 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 258 - -
Ssu7g1412 267 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Ssu7g1412 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g1412 267 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 258 - -
Ssu7g1412 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu7g1412 267 Gene3D - 69 148 - -
Ssu7g1412 267 Gene3D - 13 66 - -
Ssu7g1412 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1412 Ssu-Chr7 30319747 30321614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1412 1 267 MYB Transcription Factor Family AT2G31180 47.464 3.01e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1412 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1412 K09422 - gmx:100807569 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1412 7 30319747 30321614 Ssu7g1412 7 30319747 30321614 ECH