Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1408 ATGGGGCAAGGGCAATCCAAAGATGAATTGCTCTACCAGCAAGTCAGTTACGGGAACGCCGAAGGAATCAAAGCCCTTCACAGAGAAGGTGCAGGCCTAGAGTGGATGGACAGAGAAGGAAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCAGTTTTATAATGTTGCCAGAACTTTGATAGAACTTGGAGCCAATCTCAATGCATACCGTCCTGGTCGTCATGGTGGGACTCCATTGCATCATGCGGCGAAAAGGGGCTTTGACAGTATTGTTAAGTTACTTCTTTTGCATGGAGCTAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTCGAGGTTGCCAGGGCCAAAGGGTACAGCAATGTTGTTCGTGCGATTGAGAGTCATCTATGCTTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAATTGGTATCCAAAAAAGTttGGGTGGTTGTTTTACCAGTTGGCTCCCGTAATCTTACCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAATTTGCAGGATGCACAACCACGTACAATTATTGCTCTGTGGAAGGCCAATTTACAAGAACCAAAGCTTCACCAGTCTGATCCATCAGTGACAATTGTTGATCACGCTACTAAAACACGCATTAAACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACTGGCAAGTCCAGCATTCTTGCAAAATAATGTGCCCACAGGTCCACCCACAGCACCACCAGATGCAGAAGACACACAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCACCCTTTGCTGATACACAGCCAAACTTTGAAGCAAGCTCTTCAGGCAGTGCAGTGAATACAGGCAATCAGGGTTTCTTGGGCACACCAAATCCAAAGACAAGTGATAGTAAGTTGGTGCATGAAACTAACCCAGCTGGCAATAGTCAGCACCTCCAAAGCCATGAAAATGTCTCTGCTGGGCTTACTGCTAGTGGTTTGGATTTCAATCCATCAGCGCCGCCAATTGCTGGTGAGATTCCAACAGATGGCTCCATTCATTATCCATCAATTGATTTAAGCCCTGTTGATATGGCATCTCCAGTTGTTGAGAAGCTACctaaagaagaaggaaaaaatgcTAGTGGAAGTGGTTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGGTCATAAAGCTGTATCATGTTTGA 1392 0.4519 MGQGQSKDELLYQQVSYGNAEGIKALHREGAGLEWMDREGKTPLIVACMNPQFYNVARTLIELGANLNAYRPGRHGGTPLHHAAKRGFDSIVKLLLLHGANPLVLNDDCLTALEVARAKGYSNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRNLTKPYKLELAIYSNLQDAQPRTIIALWKANLQEPKLHQSDPSVTIVDHATKTRIKLGPASENDKQQLTWFSNACKGIPLASPAFLQNNVPTGPPTAPPDAEDTQLAMAISASLQSAMQERPPFADTQPNFEASSSGSAVNTGNQGFLGTPNPKTSDSKLVHETNPAGNSQHLQSHENVSAGLTASGLDFNPSAPPIAGEIPTDGSIHYPSIDLSPVDMASPVVEKLPKEEGKNASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQVIKLYHV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1408 463 PANTHER ROLLING PEBBLES, ISOFORM B 1 463 - -
Ssu7g1408 463 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 463 - -
Ssu7g1408 463 SUPERFAMILY RING/U-box 411 457 - -
Ssu7g1408 463 MobiDBLite consensus disorder prediction 285 343 - -
Ssu7g1408 463 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Ssu7g1408 463 Pfam Zinc finger, C3HC4 type (RING finger) 410 457 - -
Ssu7g1408 463 Gene3D - 3 147 IPR036770 -
Ssu7g1408 463 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Ssu7g1408 463 SMART ANK_2a 39 69 IPR002110 GO:0005515
Ssu7g1408 463 SMART ANK_2a 75 104 IPR002110 GO:0005515
Ssu7g1408 463 SMART ring_2 412 450 IPR001841 -
Ssu7g1408 463 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Ssu7g1408 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Ssu7g1408 463 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Ssu7g1408 463 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Ssu7g1408 463 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Ssu7g1408 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 462 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1408 402 460 C3H Transcription Factor Family AT3G06140 35.593 1.69e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1408 - - gmx:100789309 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1408 7 30282713 30288324 Ssu7g1408 7 30282713 30288324 ECH