Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1403 ATGCGCCTTAAGAGACATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGAGTCTGCCGAGAGAAAGCAACTGGTCATGTATATGCTATGAAGAAACTTAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTAAAAGCCGAGAGGAATCTACTTGCAGAAGTTGACAGcaattgcattgtaaagctttATTGTTCCTTTCAAGATGAAGAatatttatatctcataatGGAGTATCTACCTGGTGGTGATATGATGACGTTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCaattcataaacataattatattcataGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAGAAGGACTTCTCTATTGGAAGCAACAGAAGTGGAGCCCTTCAGAGTGATGGACGTCCTTTGGCTCCTAAAAGAAGCCAACAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTTGGAACACCTGACTACATTGCCCCCGAAGTTCTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCCCTGGGAGCAATAATGTATGAAATGCTAGTGGGGTATCCACCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATtggagaaattatttaaaatttccagAAGAAGCTAAACTATCAGCAGAGGCAAAGGATCTTATCTGTAGACTCCTATGTAATGTGGAACAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGatactcaaaattttgagaagtttgaagagGTTGATAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCGTCTAAAGATGTTAACTTTGTTGGGTACACATATAAGAACTTTGAAATCGTGAATGATGATCAACTACCCGAAATTGCTgaattgaagaagaagagcaCAAAACCTAAGCGGCCGTCTATTAAGACCCTATTTGATGATGAATCGGCTACAGCTGCCAATCAACCTGTCCAAGGGAGCTTCTTAAAACTCTTACCTACTCAACCGGAAATTCCTGAGAAGAGTGAATCTCAATGA 1326 0.3831 MRLKRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSIGSNRSGALQSDGRPLAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLPEIAELKKKSTKPKRPSIKTLFDDESATAANQPVQGSFLKLLPTQPEIPEKSESQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1403 441 SMART pkinase_C_6 313 377 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu7g1403 441 SMART serkin_6 13 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1403 441 ProSiteProfiles AGC-kinase C-terminal domain profile. 313 385 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu7g1403 441 Pfam Protein kinase domain 15 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1403 441 MobiDBLite consensus disorder prediction 392 441 - -
Ssu7g1403 441 ProSiteProfiles Protein kinase domain profile. 13 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1403 441 Gene3D Phosphorylase Kinase; domain 1 4 98 - -
Ssu7g1403 441 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 439 - -
Ssu7g1403 441 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 439 - -
Ssu7g1403 441 MobiDBLite consensus disorder prediction 174 196 - -
Ssu7g1403 441 MobiDBLite consensus disorder prediction 410 425 - -
Ssu7g1403 441 SUPERFAMILY Protein kinase-like (PK-like) 11 361 IPR011009 -
Ssu7g1403 441 MobiDBLite consensus disorder prediction 392 407 - -
Ssu7g1403 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Ssu7g1403 441 CDD STKc_NDR_like 11 376 - -
Ssu7g1403 441 Gene3D Transferase(Phosphotransferase) domain 1 99 329 - -
Ssu7g1403 441 Pfam Protein kinase C terminal domain 331 375 IPR017892 GO:0004674|GO:0005524|GO:0006468
Ssu7g1403 441 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1403 Ssu-Chr7 30204250 30211291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1403 1 439 AGC Kinase Gene Family AT3G23310 86.395 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Ssu7g1403 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1403 K08790 - gmx:100805439 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1403 7 30204250 30211291 Ssu7g1403 7 30204250 30211291 ECH