Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1379 atgttaaaagtaGACTTAGAAATGCCCATGGTTTTTAAAGGAAAGTATCGAGTGGAATGTTTCGCTATGAGAGGTAAGAGTTTGATAAGTAAGAGGCAGATTAGCAtaagattgagaaaaatgatCAAGTGTATATGTTCGAGGGAGCAGTTAAGCGTAGAGGAATTAAACTACTCATCAGAGTCCCTGGCAACCAGGGACTATTCGGCAAGTGGTTATTCATCTCGACCTGGTGAAATCGACACAAAGCTGGACAATAGCAACATTGAAGAAGCAGAGTCGTCTCTCCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGCTAGGAAGACTTGAATATCAGAAAGGCAATGTCGAAGCAGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTCCCAAGATAAAAGTTTCTATATCTAGAAGATGTGAACCCAATAGCCGCCGTTCGCAAAGTGATTCAATGCCTCCTATGTCAATGCATGCTGTTAGTTTACTTCTTGAAGCTGTCTTTCTCAAGTCTAAATCGTTGCAGGCCCTTGGAAGGTTTCAAGaTGCTGCTCAGTCATGCAAAACTATTTTAGACACTGTTGAATCTGCTTTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAACTACAAGAGACAGTGGCAAATGCTGTAGAATTGCTTCCAGAGTTATGGAAGCTTGCAGGCTCTCCTCAAGATGTTATCTCATCATTTCGGAGGGGCTTGCTTTATCATTGGAATCTTAACACTGAAGCCACTGTAAGAATACAAAAGGAATTTGCTTTGTTTCTCTTGTACAGTGGTTGTGAAGCAAGCCCTCCTTCTCTCCGCTCTCAATTAGATGGTTCCTTTGTGCCAAGAAACAACCTAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAATCTGTTCTTGGAAGCATTGTATGGGACCCTTCATTAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTGGCTCAACAGATTGAGGAATTGCTTCCTGAAAAcatggagagaaaagaaagacattATACTCTAGCTCTTTGTTACTGTGGGGAAGGTGAACATATCACTGCTTTGGATCTTTTGAGGAACTCATTGAATCATAGAGAGAACTCAGACTGCACAAGGGAGTTACTTCTAGCTTCAAAAATTTGTGCAGACAACAAGGTTTGCATTGAAGATGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTGTATGGAAAGTGCATGCAGATGGTAGCTATTGCAAATTGCTTGTTCGGTGTTCTACTGTCATCAAAATCCAGGTCAGCTGCTTCTGAATCAGATAAGGTTTTGATGCAATCTGAAGCACTCAGTGCTCTAAAAGCTGctgagagaatgagggaaagTGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTAAGCATTGCTTTTGATCATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAATGTTGGTGGATATATACTACTAGCAAGGATTTTATCAGCTCAAAAAAAGTTTGTGGATGCAGAGCTTGTTATTGATGCTGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAATTACGGATTGCGCAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGgtccaaaataaaagtttaggCATGACTAGTAAGGTTGTGAAGAGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTTGCAAAGTCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACTCAACTGGTTTACTTTTTGAAGCCAGAGGTCTTCATCAAGAAGCTATGAAATCATTCAGGAAAGCCTTAGATATTGAGCCCAACCATGTGCCAAGTTTGATATCCACAGCCTGTGTGCTCAGACAACTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCACTACGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGCTATACAAAGCTGATTTGGGGACATCAACAATGGAAGCCGTTGAATGCTTTGAAGCAGCGGCTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATaa 2253 0.395 MLKVDLEMPMVFKGKYRVECFAMRGKSLISKRQISIRLRKMIKCICSREQLSVEELNYSSESLATRDYSASGYSSRPGEIDTKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIAAVIPKIKVSISRRCEPNSRRSQSDSMPPMSMHAVSLLLEAVFLKSKSLQALGRFQDAAQSCKTILDTVESALPEGWPENFVSDCKLQETVANAVELLPELWKLAGSPQDVISSFRRGLLYHWNLNTEATVRIQKEFALFLLYSGCEASPPSLRSQLDGSFVPRNNLEEAVLLLLILLRKSVLGSIVWDPSLIDHLSFALSVSGEFMTLAQQIEELLPENMERKERHYTLALCYCGEGEHITALDLLRNSLNHRENSDCTRELLLASKICADNKVCIEDGIKYSCKAISQLYGKCMQMVAIANCLFGVLLSSKSRSAASESDKVLMQSEALSALKAAERMRESDPYIVLHLCLEYAEQRKLSIAFDHAKKLIKLEGGSNVGGYILLARILSAQKKFVDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGMTSKVVKSKGNRDRRLEMEIWHDLANVYTALSQWQDAEVCLAKSEAINPYSASRWHSTGLLFEARGLHQEAMKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLLYKADLGTSTMEAVECFEAAAFLEESSPIEPFR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1379 750 Gene3D Tetratricopeptide repeat domain 73 601 IPR011990 GO:0005515
Ssu7g1379 750 Pfam Tetratricopeptide repeat 642 672 IPR019734 GO:0005515
Ssu7g1379 750 ProSiteProfiles TPR repeat profile. 639 672 IPR019734 GO:0005515
Ssu7g1379 750 SUPERFAMILY TPR-like 550 720 IPR011990 GO:0005515
Ssu7g1379 750 SMART tpr_5 709 744 IPR019734 GO:0005515
Ssu7g1379 750 SMART tpr_5 639 672 IPR019734 GO:0005515
Ssu7g1379 750 SMART tpr_5 513 546 IPR019734 GO:0005515
Ssu7g1379 750 SMART tpr_5 172 205 IPR019734 GO:0005515
Ssu7g1379 750 SMART tpr_5 357 390 IPR019734 GO:0005515
Ssu7g1379 750 SMART tpr_5 605 638 IPR019734 GO:0005515
Ssu7g1379 750 PANTHER OS10G0471400 PROTEIN 33 750 - -
Ssu7g1379 750 Gene3D Tetratricopeptide repeat domain 602 747 IPR011990 GO:0005515
Ssu7g1379 750 SUPERFAMILY TPR-like 346 572 IPR011990 GO:0005515
Ssu7g1379 750 PANTHER PROTEIN NPG1 33 750 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1379 Ssu-Chr7 29875695 29880622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1379 32 750 Calmodulin-binding Proteins AT4G28600 52.861 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1379 K21843 - gmx:100789469 1293.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1379 7 29875695 29880622 Ssu7g1379 7 29875695 29880622 ECH