Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1376 ATGATACAAATGCATGACTTGATACAAGAAATGGGTTTGAATATAGTTCGTCAAGGCATTGAAGATCCGGGAAAACGTAGCCGATTGAGAGCTGTAGAAGAAGTTTCTGATGTACTTGAAAATAGAAAGGGGGGTGATGTAGTTCAAGGGCTAAAATTAGATTTGTCTCAAATTAAGGATTTACACTTAAATGCTGACACATTCAACATGATGACTAATTTAAGAATTCTTAAATTATACATCCCTTCTGGTGAGAGATCAGGTAACGTGCACTATTCTGGTGTCCTTAGTAAATTATCTTGTAAATTGAGGTACCTTGAGTGGAGTGGATGCCATTTGAAGTCTCTTCCAGCAACTTTTTGTGCTAAGATGCTTGTTGAGATTTGCATGCCACACAGCCATATTACAGAGCTTTGGCAGGGGGTCCAGGATGTTGTCAATTTAGTGCGCATTGACCTAAGTGAATGCAAGCACTTGAAGAAACTCCCAGATTTGTCTAAGGCGTCAAAACTTAAATGGGTGAATCTCTCTGGTTGTGGAGGTTTGTGTGGTGTTAATTCATCTGTTTTCTCTTTTGACACACTTGAAACTTTGATACTGGATGGCTGCAAAAAGGTCAAGAGTCTTAAAAGTGAGAAACATTTAACATCTCTGAAGATGATCAGTGTCAATGGCTGTACTAGTCTCAGGGAATTCTCAGTGTCATCAGATTCAATCACAAGCTTGGATTTAAGCAGCACAGGAATTGAAATGTTGGACTCTTCAATTGGGCTTCTAAGAAGTCTCGAGTCACTCAATGTACAAGGTTTGGGACATGGTAATCTTCCAATTGAGTTATTTTCCCTAAAGGATCTTGAGGAGCTTAGGATTTGTAATTGTAGACCAGCAATTGACAAACAGAAGCTACATGTGTTATTTGATGGCTCAACAGATCTACGGCTACTACACTTGAAGGATTGTTGTAACTTGTGTGAGCTCCCCGACAACATCAGCGGCTTATCAAAGTTATATGGGCTAAGACTAGATGGTAGCTGTGTGAAGACATTGCCAGCTAGCATCAAGCATCTCAACAATCTGGAAACTCTGTCCTTAGAGAATTGTGGGAAGCTTGGGAGTCTGCCTGTGCTTCCACCAAGTGTCACACGGTTTAATGCCGTGAATTGCAGGTCATTGAGGACAGTATCCACTTTAAAGACTTTTGCTGTTAACATGACAGGGAAGGGCAAATTCATTTCATTCCAGAATTGTGTTGGACTGGATGAACCTTCACTCCACTGTATTATGGAGGGTGCTCACTTAGCAATCAGCAATGCTGTGTGGCAAAATATATTCGTAAAAGGATATGGAGCCAAcaccaaattttataattataactttgtGAAGGTTTGTTTCCCAGGAAGCAGAGTCCCAGGGCTGTTCAAATATCGAACAACACACTCCACAATCAATATTGATCTTCCTTCTTCCCAATCTGACTTTGTGGGATTAATTTTTTGTGCGGTTCTTACGCCTTCCCCGGCAATGAAAAATCTTGGTGCTAAAATCTGGTGTCAGTGCTACTTGGCAGATGGTACAGAGTTTGGACTTGCCACCACATCGTATCATGAAGTTGTCACGGGGTTGAATTCTGATCATGTTTTTATATGGTGTGATTCAAGCCACTTTGACAGCATTCTCAAAGTCTATGACACTGCTGAACGACAGGTTTCCTTTGAGTTCTTCATTACAAATGATAAGGACGAACGTGTGACCATTGGTACCCGAGAGTGTGGGGTCTGCCTGCTATTTGACTCAGAAAAAGATTTTCGCCATCCAATACGGGAAGCGTATGTCAGGGTACTTGGTTTGGAATTGGAATCACAGCATAGTGCAACCTCAATGGCAACTGAAATGTCTGATGAGAATGATTGCAATGACAAATAA 1923 0.4067 MIQMHDLIQEMGLNIVRQGIEDPGKRSRLRAVEEVSDVLENRKGGDVVQGLKLDLSQIKDLHLNADTFNMMTNLRILKLYIPSGERSGNVHYSGVLSKLSCKLRYLEWSGCHLKSLPATFCAKMLVEICMPHSHITELWQGVQDVVNLVRIDLSECKHLKKLPDLSKASKLKWVNLSGCGGLCGVNSSVFSFDTLETLILDGCKKVKSLKSEKHLTSLKMISVNGCTSLREFSVSSDSITSLDLSSTGIEMLDSSIGLLRSLESLNVQGLGHGNLPIELFSLKDLEELRICNCRPAIDKQKLHVLFDGSTDLRLLHLKDCCNLCELPDNISGLSKLYGLRLDGSCVKTLPASIKHLNNLETLSLENCGKLGSLPVLPPSVTRFNAVNCRSLRTVSTLKTFAVNMTGKGKFISFQNCVGLDEPSLHCIMEGAHLAISNAVWQNIFVKGYGANTKFYNYNFVKVCFPGSRVPGLFKYRTTHSTINIDLPSSQSDFVGLIFCAVLTPSPAMKNLGAKIWCQCYLADGTEFGLATTSYHEVVTGLNSDHVFIWCDSSHFDSILKVYDTAERQVSFEFFITNDKDERVTIGTRECGVCLLFDSEKDFRHPIREAYVRVLGLELESQHSATSMATEMSDENDCNDK 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1376 640 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 477 IPR044974 GO:0006952
Ssu7g1376 640 Pfam Leucine Rich Repeat 125 143 IPR011713 -
Ssu7g1376 640 PANTHER NB-ARC DOMAIN PROTEIN 1 477 - -
Ssu7g1376 640 Pfam C-JID domain 464 599 IPR045344 -
Ssu7g1376 640 Gene3D Ribonuclease Inhibitor 238 419 IPR032675 -
Ssu7g1376 640 Gene3D Ribonuclease Inhibitor 39 237 IPR032675 -
Ssu7g1376 640 SUPERFAMILY L domain-like 3 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1376 Ssu-Chr7 29788485 29790604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1376 1 362 WRKY Transcription Factor Family AT4G12020 31.989 3.96e-39 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1376 - - ccaj:109795381 831.632