Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1374 ATGAATTCAGAGAAGCCAGTCAGCCCTGAGAATTTAAGTGAGGAAATTGATCACCAAGAAGAAGCACATGATGACACTGGTGGAACCAAACGATCTTATGAGTGCACATTCTGCAAAAGAGGCTTCACAAACGCTCAGGCTTTAGGGGGTCATATGAATATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACCAGACGCTTCACCTTCGATAACTAACAAATTCAACAGTGATGAATCCATGGCCCTTCCTTTTGTCTCGGAAATTTTAAACCAACCCACGACGCCTTACTCCATTTTGGAGTCTCAGAGGAACGGTGACATGCACTCTCATCCACCACCACCTGCGCATGCCttttattatgagttttatAACCCAAGGTCTCGGCCTTTGAGTTTGAACCAAGAGCTTCGGGGTGCCAATTTGAGTCTCCAAACTGGTCCAAGTCATGCTGATGATGTTCATCAGGTCAGGAGAGGAAATCAGAAAGATAGTGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 543 0.453 MNSEKPVSPENLSEEIDHQEEAHDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTPDASPSITNKFNSDESMALPFVSEILNQPTTPYSILESQRNGDMHSHPPPPAHAFYYEFYNPRSRPLSLNQELRGANLSLQTGPSHADDVHQVRRGNQKDSEVDLELRLGHDPY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1374 180 MobiDBLite consensus disorder prediction 1 30 - -
Ssu7g1374 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Ssu7g1374 180 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Ssu7g1374 180 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Ssu7g1374 180 MobiDBLite consensus disorder prediction 10 30 - -
Ssu7g1374 180 Pfam C2H2-type zinc finger 33 57 - -
Ssu7g1374 180 Gene3D Classic Zinc Finger 11 85 - -
Ssu7g1374 180 PANTHER OS07G0101800 PROTEIN 10 179 - -
Ssu7g1374 180 MobiDBLite consensus disorder prediction 142 180 - -
Ssu7g1374 180 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 10 179 - -
Ssu7g1374 180 MobiDBLite consensus disorder prediction 154 180 - -
Ssu7g1374 180 SMART c2h2final6 33 55 IPR013087 -
Ssu7g1374 180 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1374 Ssu-Chr7 29763922 29764464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1374 2 87 C2H2 Transcription Factor Family AT3G09290 40.909 4.68e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1374 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1374 - - vun:114191365 285.419