Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1354 ATGAGCCAGGACCTCAAGCGAGACTACGTCGTTTCGGAAGAGATAGGCCGGGGAAGATTCGGCACCGTTTTCCGGTGCTCTTCCAGAGACTCCGGCGAGTCCTACGCCGTTAAATCCCTCGACAAGGTGGCGATAACCGCCGCCGGAGACTCCCTCGACGTCCAGTGCCTATTGACGGAGCCAAAAATCGTTCAGCTTCTCTCCCCTCACCCTCACGTCGTCAACCTCCACGGTCTTTACGAGGACGAAACGCACCTCCACATGGTCCTCGACCTCTGTTACGAATCGGAGTTTCACCACCGGGCCATGTCCGAACCCGAAGCGGCTTCGGTGACGTGGCAGCTCATGCAAGCCGTGGCGCACTGCCACCGGCTCGGCGTGGCACACCGGGACATAAAGCCGGACAATATTCTTTTCGACGAGGAGAATCGGCTCAAGCTGGCCGACCTCGGCTCGGCGGAGATTTTTAAGGAGGGCGAGCCGATGAGCGGGGTGGTGGGGACGCCGCATTACGTGGCGCCGGAGGTCCTCGCCGGAAGGGATTACGACGAGAAGGTCGACGTGTGGAGCGCCGGCGTCGTTTTGTATCAAATGTTGGCGGGGTTTCCGCCGTTTCGGGGCGATTCCCCGGTGGAGATTTTTGAGGCCGTGCTTCGAGCCAATTTGAGGTTTCCTACGCGAGTTTTTGGCTCTATCTCACCCGCGGCCAAGGATCTGCTTCGTAGAATGCTGTGTAAAGACGTTTCTAGAAGGTTCTCTGCAGAACAAGTCCTCCgaCACCCGTGGTTTAGCATTGCTGAACAGAACATGCAGAAAGAGTGA 822 0.5791 MSQDLKRDYVVSEEIGRGRFGTVFRCSSRDSGESYAVKSLDKVAITAAGDSLDVQCLLTEPKIVQLLSPHPHVVNLHGLYEDETHLHMVLDLCYESEFHHRAMSEPEAASVTWQLMQAVAHCHRLGVAHRDIKPDNILFDEENRLKLADLGSAEIFKEGEPMSGVVGTPHYVAPEVLAGRDYDEKVDVWSAGVVLYQMLAGFPPFRGDSPVEIFEAVLRANLRFPTRVFGSISPAAKDLLRRMLCKDVSRRFSAEQVLRHPWFSIAEQNMQKE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1354 273 PIRSF ILK 2 261 - -
Ssu7g1354 273 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Ssu7g1354 273 SUPERFAMILY Protein kinase-like (PK-like) 6 264 IPR011009 -
Ssu7g1354 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Ssu7g1354 273 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1354 273 CDD STKc_CAMK 8 262 - -
Ssu7g1354 273 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Ssu7g1354 273 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu7g1354 273 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 269 - -
Ssu7g1354 273 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 3 269 - -
Ssu7g1354 273 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1354 273 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1354 Ssu-Chr7 29268173 29269116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1354 3 263 EF-hand Containing Proteins AT1G50700 41.264 8.76e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu7g1354 Pkinase 3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1354 - K08794 gmx:547731 510.76