Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1345 ATGTTTTATCCCATTCGCTTTAGCGACGACTTTTACCATTTTACCGTGGCCAAAACCGGGTATAAAAGGGGTGGTGGGTGCAAAATTGACGAGGAAAAACAGAGCATCTCAACACCACCACCTTCCTCCTCTACACTCTTCACTCTCTTCGTTAAATTGTTTCCCTGCACACACGCTCCAAACATGGATTCTCTCTTCAACTCACCCACTTCCGATTTCTCGTCGGAATCTTCCTCTCCGGAGGCCTTCTCGTGGGAGGGGTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTGTACGGCATGATCGCGGGCGCGACCGCCGTCGAGCACTCTGGCGAGAGGGCGAGCTCGGAGGAGAGGGCAGCGAGGAAGGAGAAGTCGTACCGCGGCGTGCGGCGGCGCCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCGACGCGGCACGGGGTGAGGGTGTGGCTGGGGACATTCGACAGCGCGGAAGCCGCGGCGCTGGCTTACGACCAAGCCGCGTTTTCCATGAGGGGTTCCGCGGCGATTCTCAACTTCCCCGTTGAGATGGTTAGGGAGTCGCTCAGGAACATGAACTACGCGCACGACAGCGAAGAAGGGTGCTCCCCTGTCGTCGCTCTCAAGAGGAAGCACTCCTTGAGGAGGAAAATTAATGTCAAGAAGAACAAAGAAAGCGCCGTGGACAATGCCGTCGTGCTTCAAGACCTCGGCCCTGATTACTTGGAACAGCTTTTGATGTCCTCTGATCATATATTCCCACCACCTTCTGATTGA 798 0.5627 MFYPIRFSDDFYHFTVAKTGYKRGGGCKIDEEKQSISTPPPSSSTLFTLFVKLFPCTHAPNMDSLFNSPTSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGATAVEHSGERASSEERAARKEKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEMVRESLRNMNYAHDSEEGCSPVVALKRKHSLRRKINVKKNKESAVDNAVVLQDLGPDYLEQLLMSSDHIFPPPSD 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1345 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 84 255 - -
Ssu7g1345 265 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Ssu7g1345 265 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Ssu7g1345 265 CDD AP2 129 189 IPR001471 GO:0003700|GO:0006355
Ssu7g1345 265 SUPERFAMILY DNA-binding domain 130 190 IPR016177 GO:0003677
Ssu7g1345 265 Gene3D AP2/ERF domain 129 190 IPR036955 GO:0003700|GO:0006355
Ssu7g1345 265 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Ssu7g1345 265 SMART rav1_2 130 194 IPR001471 GO:0003700|GO:0006355
Ssu7g1345 265 PANTHER DNA-BINDING DOMAIN 84 255 IPR044808 GO:0003700|GO:0009873
Ssu7g1345 265 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1345 Ssu-Chr7 29040544 29041341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1345 89 258 AP2-EREBP Transcription Factor Family AT3G23240 61.878 1.47e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g1345 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1345 K14516 - gmx:100804481 324.709