Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1344 ATGGAGGAGCACCAGAAGGGGAAGCAGGGCAAGGAAGAGGTGCGGTACCGCGGCGTGCGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGAGATCCGTCGAAGCAAGGGTCAAGGCTGTGGTTGGGGACATTTGACACGGCTGAAGAAGCAGCTAGAGCTTACGATCGCGCAGCTTTTAACTTGAGGGGTCATCTTGCAATTCTCAATTTTCCTAATGAGTACTATTCTCAGATAAGGGGTTCACCACCATATCCTCCTCATTTAGCATCACCCTCTTCCTCTTCTCATGCCAGTGGCGGCACTTCTTCTGGTGCACAACAGAGGCACCTTTTCGAGATCCCGTGTTTGGATGACAAGGTGTTGGAGGAGCTTCTTGATCAGTCAGAGGagcagaagaagaaaaagaagggagaTTGA 423 0.5012 MEEHQKGKQGKEEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPNEYYSQIRGSPPYPPHLASPSSSSHASGGTSSGAQQRHLFEIPCLDDKVLEELLDQSEEQKKKKKGD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1344 140 MobiDBLite consensus disorder prediction 78 110 - -
Ssu7g1344 140 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Ssu7g1344 140 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Ssu7g1344 140 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Ssu7g1344 140 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Ssu7g1344 140 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Ssu7g1344 140 PANTHER ETHYLENE RESPONSE FACTOR 1 131 - -
Ssu7g1344 140 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Ssu7g1344 140 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Ssu7g1344 140 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Ssu7g1344 140 PANTHER DNA-BINDING DOMAIN 1 131 IPR044808 GO:0003700|GO:0009873
Ssu7g1344 140 MobiDBLite consensus disorder prediction 92 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1344 Ssu-Chr7 28978855 28979277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1344 13 135 AP2-EREBP Transcription Factor Family AT3G23230 69.355 1.12e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g1344 AP2 5.2e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1344 - - gmx:100793703 216.853