Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1343 ATGGATGAAGAAGGATCAAGGGGAAGGGGCAAGGAGGACGGCGGAGATGTCCGGTACCGGGGGGTTCGGAGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGAGACTCGACGAGGCAGGGTCAGAGGGTGTGGCTGGGAACTTTCAACACGGCGGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATGCCATGAGAGGTCCATTTGCAATCCTCAACTTCCCCGATGAGTACCCTATGACAGCTGCTGGTGGCACTAGTGCTGCCACTCATTCCTCTGCTGCTTCATCATCCTCAGCCTCTACTTCCAGGCACGCCAATGTGGAAGGCAGAGAACGAAGTGAGCAAGGAAGGCAAGTGTTTGAGTTTGAGTACTTGGATGACAGGTTGTTGGAGGAGCTTCTTGATTGTgaggacaaaaagaaaaagggaccCTAA 441 0.5261 MDEEGSRGRGKEDGGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPDEYPMTAAGGTSAATHSSAASSSSASTSRHANVEGRERSEQGRQVFEFEYLDDRLLEELLDCEDKKKKGP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1343 146 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Ssu7g1343 146 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Ssu7g1343 146 PANTHER DNA-BINDING DOMAIN 9 140 IPR044808 GO:0003700|GO:0009873
Ssu7g1343 146 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Ssu7g1343 146 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Ssu7g1343 146 PANTHER ETHYLENE RESPONSE FACTOR 9 140 - -
Ssu7g1343 146 MobiDBLite consensus disorder prediction 81 116 - -
Ssu7g1343 146 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Ssu7g1343 146 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Ssu7g1343 146 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g1343 146 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Ssu7g1343 146 MobiDBLite consensus disorder prediction 86 106 - -
Ssu7g1343 146 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1343 Ssu-Chr7 28923859 28924299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1343 13 143 AP2-EREBP Transcription Factor Family AT3G23230 58.779 1.81e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g1343 AP2 1.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1343 - - gmx:100775830 199.904