Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1342 ATGGATCTTGTAAGCAGAAGATACTTGATTTATGTGTCACAACATGGGTCACAAGCTCTTTCTCCAATCTCAAGTCCAGGGAGTTCAATCTTTCATCCTCATCTGCATTCTTCCAGCTCCAGCTTTCCCATCATTGCAATTGCTATAATAGGAATAATGGCCACGGCTTTCTTGCTGGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGAATTGATATTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCATCCCCAATATACTTACCTGGCATAGAACCTCGTGGACTAGATGAGGCACTGATCCGGTTAATCCCAGTGATTCAATACAAAACACAAGGGAATGGAGAATTTGGAGAAAGAAGCTTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGACGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACATTGATCAGCTTCTCAGCCTAAGGCCCTCTTCCCCTCTGGATCAAAACCCACCAAGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGCAATGTTCATGATAGAAgccaaaatttgcaagaaagaGGCAATGCTTTGGAGTTAACATTACCAACATGTCCTATAAGTCCTTATTCACCAAAGAAGTTGGAACATAGAACTGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACAAGCATGGGGGACGAGTGCATTGATATTAGAGCCAAAGATGACCAGTTCTCAGTCCAACCCATCAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCAGCAGAACAGACAAGTCAATGAGGTCAACTCCATTGAAGGTTGCAGTGTTAGTGGTAGAGCCAAGAGATCATTCTTTTCCTTTGGATATGGAAGTAGATCCAGAAGTTCTGTGCAACCTGTTTTTTTGGACCCCTGA 1077 0.4206 MDLVSRRYLIYVSQHGSQALSPISSPGSSIFHPHLHSSSSSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPIYLPGIEPRGLDEALIRLIPVIQYKTQGNGEFGERSFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHIDQLLSLRPSSPLDQNPPRENLIGGDEDFVVIELGNVHDRSQNLQERGNALELTLPTCPISPYSPKKLEHRTVQKKAMKLHKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALRQQNRQVNEVNSIEGCSVSGRAKRSFFSFGYGSRSRSSVQPVFLDP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1342 358 SMART ring_2 133 174 IPR001841 -
Ssu7g1342 358 Pfam Ring finger domain 132 175 IPR001841 -
Ssu7g1342 358 SUPERFAMILY RING/U-box 132 181 - -
Ssu7g1342 358 CDD RING-H2_PA-TM-RING 132 175 - -
Ssu7g1342 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 180 IPR013083 -
Ssu7g1342 358 PANTHER RING-H2 FINGER PROTEIN ATL16 25 357 - -
Ssu7g1342 358 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Ssu7g1342 358 PANTHER RING-H2 FINGER PROTEIN ATL16 25 357 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1342 Ssu-Chr7 28903317 28904393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1342 33 358 C3H Transcription Factor Family AT1G04360 53.371 3.34e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1342 - - gmx:100775286 574.704