Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1338 ATGGAACAGGAAAAGGTTTCTCTTGTATATAGAGAGTTCAAGCCACACCTGTTCATGGTCTTAGTCCAGGTGGGTTATGCCCTCTTATATTTCATCACCGAAGCCTCCTTCAATCATGGGATGAGCCCTCATGTGTATGTAACCTATCGGCATATTGTGGCTGCGGTTGTGATGTTTCCTTTTGCATACTTTCTGGAGAGAAATGCAAGACCAAAGCTGACATTTGCTCTTTTCATGGAAATTTTTGTGCTTTCTCTGTTAGGggTTAGCGTGCCTCTTAATATGTACTTTGCAAGCCTGAATTACACAAATCCAACCTTTGTTGCTTCTATGGTCAACACCACAGCTTCCCTTACCTTCATTATTGCAGTGGCACTCAGGTTTGAGGTTCTTGATCTTCGAAATCCTCGTGGTATGGCAAAAGTTATTGGGACCGTGATCTCCTTAGCTGGTGTTTTGATCATGACACTGTACAAAGGACCCGTTATGAGAAATTTATGGCATCCTCTAATCCATATTCCAGGGAAAAGTGCTGCTATCAATGAAAACTGGTTAAAGGGCTCACTTCTAACAGTTTCAAGTTGTGTTACATGGTCTTTATGGTTCATTATGCAGGCATCCACTTTGAAAAGATACCCTGCCCAATTGTCACTCACTACGTGGATGTGCTTTGTTGGAGCAGTACAATCAGCTGTTTTCACACTTATAGCAGAACACAACTCTTCAGCATGGTCTATGGGGCTAAACATTGACTTGTGGTCCACAATATATGGGGGAGTTGTCGTTGCTGGTTTGATAATCTACATTCAACTATGGTGCACTGAGAAAAAAGGGCCAGTTTTTGTCACAATGTTTAACCCTCTTTGCACGATATTAGTGGCAATTCTAGCCTACTTTGTCCTCGGAGAGAAACTCTATTTGGGCAGCATCATAGGTGCATTTATTGTCATCATTGGTGTGTACTTTCTATTGTGGGGCAAAGAAGGTGACCAATAG 996 0.4197 MEQEKVSLVYREFKPHLFMVLVQVGYALLYFITEASFNHGMSPHVYVTYRHIVAAVVMFPFAYFLERNARPKLTFALFMEIFVLSLLGVSVPLNMYFASLNYTNPTFVASMVNTTASLTFIIAVALRFEVLDLRNPRGMAKVIGTVISLAGVLIMTLYKGPVMRNLWHPLIHIPGKSAAINENWLKGSLLTVSSCVTWSLWFIMQASTLKRYPAQLSLTTWMCFVGAVQSAVFTLIAEHNSSAWSMGLNIDLWSTIYGGVVVAGLIIYIQLWCTEKKGPVFVTMFNPLCTILVAILAYFVLGEKLYLGSIIGAFIVIIGVYFLLWGKEGDQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1338 331 PANTHER WAT1-RELATED PROTEIN 13 331 IPR030184 GO:0016021|GO:0022857
Ssu7g1338 331 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020|GO:0016021
Ssu7g1338 331 Pfam EamA-like transporter family 15 156 IPR000620 GO:0016020|GO:0016021
Ssu7g1338 331 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 159 - -
Ssu7g1338 331 PANTHER WAT1-RELATED PROTEIN 13 331 - -
Ssu7g1338 331 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1338 Ssu-Chr7 28852997 28855304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1338 14 331 Nodulin-like Gene Family AT5G07050 42.988 3.18e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1338 - - gmx:100527877 601.668