Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1331 ATGGAGATAACCGGAGGAGCTGATGTTGCAGAAAGTGTAGCCCAATTCGCAAGGAGGCGTCAGCGTGGGGTTTGCGTGCTCAGCGGCAGTGGCTCCGTGGCCAATGTTACTCTTAGACAACCCGCTGCTCCTGGTGCTGTGGTGGCACTTCATGGAAGGTTTGAGATTCTGTCCCTGACCGGGACTTTCCTACCTGGCCCTGCTCCTCCAGGATCCACGGGACTCACCGTGTACCTCGCTGGAGGACAGGGCCAGGTAGTGGGAGGGAGTGTGGTCGGATCTCTAGTTGCAGCAGGACCAGTCATGGTCATTGCTGCAACTTTTGCTAATGCAACATATGAGAGACTGCCGCTTGATGAGGATGACGAGGGGCCTAGTTCTGCGGCGGCGGTGCGAGGCGGAGGATCGCCGCCGCCGCTGGGAATTGGAAGCAGTGGGGGTGGCCAGTTGCAGGGTGGGATTCCAGATCCATCATCTCTGCCTTTGTATAATCTTCCACCAAATGGAGGAGGGGGACAGGTGGGGCATGAAGCTCTTGCTTGGGCTCACGGAAGGCCACCTTTCTGA 567 0.5802 MEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSAAAVRGGGSPPPLGIGSSGGGQLQGGIPDPSSLPLYNLPPNGGGGQVGHEALAWAHGRPPF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1331 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 109 IPR005175 -
Ssu7g1331 188 Gene3D - 1 123 - -
Ssu7g1331 188 PANTHER DUF296 DOMAIN PROTEIN 1 188 - -
Ssu7g1331 188 MobiDBLite consensus disorder prediction 117 188 - -
Ssu7g1331 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 188 IPR014476 GO:0003680
Ssu7g1331 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Ssu7g1331 188 ProSiteProfiles PPC domain profile profile. 1 130 IPR005175 -
Ssu7g1331 188 CDD DUF296 2 80 IPR005175 -
Ssu7g1331 188 PIRSF ESCAROLA 1 188 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1331 Ssu-Chr7 28720192 28720758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1331 1 188 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.731 1.88e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1331 - - var:108341460 297.745