Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1330 ATGTTAAAGGCAGTGGCATCTGGGCTGTTGATTACCTCTATCCTCATAGGTGTATCTGCAAATGATAATGGATTTCCTAGATGTAACTGTGATGATGAGGCCAGCTTGTGGACTATTGAGAGCATTCTGGAGTGTCAGAGAGTTGGAGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCTATTGAGCTGCTTTATTTCATCAGTTGCTCAAACGTCCCATTCAAATGGGTACTTATCCAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGTTGAATGGGTGGACCTATGGCCCTCACACTTTCCAACTTATGGTGGCACTTACTGTCTCTAAAATTCTCACTGCATTGGTATCATGTGCCACTGCCATAACCCTCATCACTCTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGAGAATTCATGCTGAAGAAAAAGACGTGGGATCTTGGACGTGAGGTTGACAATATTATGAGACAAAAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAAGAGATACGCAAGTCACTCGATAGACATACGATTCTGTATACCACTTTGGTGGAGCTGTCTAAAACACTGGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAAGACTGAGATGAACCTCACTCATGAATTGAATGGGaggaattttaatttgtctatACCCATTACTGATCCAGATGTTGTGAGAATTAAAGGAAGCGATGGTGTGAATATACTTAGCTCCGACTCAGCACTTGCTGTTAGGAGTAGTGGAGATTCTGGAGAGGCAGGACCAGTTGCAGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGAACACCTGAGTTAAGACAGGCTTGTTATGCAATATTGGTCTTAATTCTTCCTACTGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTTGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAACAGGCGAAAAGGAATGCAATGATGGCAAGCCAGGCAAGAAACGCGTTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATgataatttaaagaatgaaCAGAAACTTATTGTGGATGCGATGCTAAGGACCAGCAATGTCCTATCAAACTTGATAAACGATGCCATGGACAACTCAACTAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGATTGCATTCCCTGCTAAAGGAAGCAGCTTGCCTTTCCAAGTGCATGTGTGTTTATAGGGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTCTTTGCCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAACCTACTGGAACACAACCATGGGGGAGGGATTCTTGTATTTCGAGTTTTTGCAGAAACTGGAAGTCAGGGAAGGAGTGACAAAGGGTGGACAGCCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGTGATTCCGAAGTTGGGAGCTCAGTTTCTTCAGGACTTGGGGGTAGGAAATATAACAGTGATAGAGTTGGGGGCAGATTGAGCTTCAACATTTGCAAGAGGGTAGTCCAGTTGATGCAGGGGAACATATGGTTAGTACCTTGTACACATGGTTATCCTCAAAGCATGACACTTCTTCTTCGGTTTCAATTACGACCGTCCATTACCATAGCCATCTCTGAACCTGGAGAATGCTCAGACCGTACCGATTCCAATTCAATGCTGAGAAGTCTGCAAGTTCTTTTAGTGGACAATGATGATGTAAATAGAGCAGTGACCCAAAAATTGCTTCAGAAACTAGGTTGTGTTGTTACTTCTGTTTCTTCAGGATTTGAATGCCTTTCTGTCATTGGACCTGCTGGATCTTCTATTCAAGTCATTCTTTTAGATCTTCACATGCCTGATTTAGATGGCTTTGAAGTTGCCACAAGGATTCGAAAGTTTAGAAGTGGAAATCGGCCTATGATTGTTGCCTTGACTGCAAGTGCAGAAGAAGATTTGTTGGAAAGATGCATGCAAGTTGGTATTAATGGAGTTATCCGGAAACCAGTTTTGTTGCAAGGAATCGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTACTGTGA 2280 0.4232 MLKAVASGLLITSILIGVSANDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDNIMRQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNFNLSIPITDPDVVRIKGSDGVNILSSDSALAVRSSGDSGEAGPVAAIRMPMLRVCNFKGGTPELRQACYAILVLILPTGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRNAMMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSLLKEAACLSKCMCVYRGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLEHNHGGGILVFRVFAETGSQGRSDKGWTAWRPSSSSGDVNIRFEIGINSSDSEVGSSVSSGLGGRKYNSDRVGGRLSFNICKRVVQLMQGNIWLVPCTHGYPQSMTLLLRFQLRPSITIAISEPGECSDRTDSNSMLRSLQVLLVDNDDVNRAVTQKLLQKLGCVVTSVSSGFECLSVIGPAGSSIQVILLDLHMPDLDGFEVATRIRKFRSGNRPMIVALTASAEEDLLERCMQVGINGVIRKPVLLQGIASELRRILMQGNNVL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1330 759 Gene3D - 161 329 IPR029016 -
Ssu7g1330 759 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Ssu7g1330 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Ssu7g1330 759 CDD REC_ETR-like 633 748 - -
Ssu7g1330 759 SUPERFAMILY CheY-like 631 752 IPR011006 -
Ssu7g1330 759 Gene3D - 330 427 - -
Ssu7g1330 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 12 756 - -
Ssu7g1330 759 PANTHER ETHYLENE RESPONSE SENSOR 2 12 756 - -
Ssu7g1330 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Ssu7g1330 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 589 IPR036890 -
Ssu7g1330 759 SMART REC_2 633 752 IPR001789 GO:0000160
Ssu7g1330 759 SUPERFAMILY GAF domain-like 185 331 - -
Ssu7g1330 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Ssu7g1330 759 Pfam Response regulator receiver domain 635 742 IPR001789 GO:0000160
Ssu7g1330 759 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
Ssu7g1330 759 Gene3D - 633 757 - -
Ssu7g1330 759 Gene3D - 428 606 IPR036890 -
Ssu7g1330 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Ssu7g1330 759 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 591 IPR003594 -
Ssu7g1330 759 Coils Coil 334 364 - -
Ssu7g1330 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Ssu7g1330 759 ProSiteProfiles Histidine kinase domain profile. 371 585 IPR005467 -
Ssu7g1330 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 602 - -
Ssu7g1330 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1330 Ssu-Chr7 28686040 28688839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1330 20 752 Miscellaneous Gene Families AT3G04580 58.177 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g1330 GAF 6.8e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1330 K14509 - gmx:100787425 1390.56