Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1315 ATGTTGCAGGATGTTTTTGATCAGCCACTGCCACCAAAGGCGGAACCACAACAGCAACTTCCCATTGATGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTTTGTAACACTGATTTTTTCCCAGAGGCTTTGCCGAATTCTGTTACTTCCAGCCCAAACTGTTGCTATGAGGAGAACTCCTCATATGCCACAACAAACATATCTTTAACTGCAGATGTAGAAAACAAGTTAAATAGCAATAGCAATACAGTCACCACCCCAACTAGCACTACcaccaacaccaacaacacaacCAACAGTAGTAATCTGTCTATTATCTTTGACTCCCAAGAAGAAATTGACAATGACATCTCTGCCTCGATAGACTTCTCCCTATCTCCATCTTTCAATGTTTCCCCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGTCTCAGGTCCAACTAGCAGCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGATTCTGTTGCACATCCTCTTATGGGGGCTCCATTGCCATCTGTTTTTGAAGAGGATTGCATATCTTCTGTCCCTTCTTATGTGCATCTTAACCCTTCATCTCCTTGCACTTATCTCGGTCCTGGCATGCCACCATACATGCCTCCTGGGCCCCTTACTACTGCCTTATCAACTGATAGTTCTGGGTTATTTGGTGGGAGCATTCTTCAGGCACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAATCAGCAACTGGTACCCGGGGCTGGTAGTTCTGCCAATTTGACACCAGAAATCTCAAACTTAGAGGACTCCTCCTTCAAGGTTGGAAAACTTTCTGTTGagcaaaggaaagaaaagatcAATAGATAcatgaagaaaagaaatgaaagaaacttTAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCatgaagaagatgatgaagaagaaGTAGTTgtgaaagaagaagatgatatGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGCGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1230 0.3976 MLQDVFDQPLPPKAEPQQQLPIDEISSPLSARIFELCNTDFFPEALPNSVTSSPNCCYEENSSYATTNISLTADVENKLNSNSNTVTTPTSTTTNTNNTTNSSNLSIIFDSQEEIDNDISASIDFSLSPSFNVSPFLPVTSQQEQFDFSSVQSQVQLAACSVVEGFSQYPTDSVAHPLMGAPLPSVFEEDCISSVPSYVHLNPSSPCTYLGPGMPPYMPPGPLTTALSTDSSGLFGGSILQAQELEYQGENGRMYCTDSIQRVFNPPDLQALGTENQQLVPGAGSSANLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEEDDEEEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1315 409 PANTHER CCT MOTIF FAMILY PROTEIN 22 409 - -
Ssu7g1315 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 409 - -
Ssu7g1315 409 MobiDBLite consensus disorder prediction 346 375 - -
Ssu7g1315 409 Pfam CCT motif 311 353 IPR010402 GO:0005515
Ssu7g1315 409 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g1315 409 MobiDBLite consensus disorder prediction 346 368 - -
Ssu7g1315 409 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
Ssu7g1315 409 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1315 Ssu-Chr7 28379569 28383270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1315 281 360 C2C2-CO-like Transcription Factor Family AT5G24930 37.647 9.44e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g1315 CCT 3.4e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1315 - - gmx:100803778 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1315 7 28379569 28383270 Ssu7g1315 7 28379569 28383270 ECH