Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1302 ATGTATTGTGAAGTTATGGCAGGAAACATGGTGTGGGGTGTAATAGAAGAGGAGGGATGGAGGAAGGGGCCTTGGACTGCTGAGGAGGACAGATTGCTCATTCAGTATGTCAAGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATTAAGAATTATTGGAGGACCCATTTCaagaaaaagactaaaaacCCCTGTGAAGCTGCTGAGAAGGCTAAAATTCGCTCCTCAAGGAGGCAGCAATTTCAACAGCAACAACTGCAGTTGAAGCAGATGCAGGTTCAGCAGCAGcatcagcaacaacaacaacaacaactgcAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAAATGACCATAGAGTGCCTTCTATATCTCAAGAGACACAAGAAATGGTTAACATGTACCCAAACACTTCAGAACAGCAGGGTTACTTCTACTCTATGTTCAATGTCAATGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTGTGGGATGGGCTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAGTGCCACAAGCAAAGCTAGTTTACACAATTTAGTTGCTCCTTTCTGTTAA 801 0.4182 MYCEVMAGNMVWGVIEEEGWRKGPWTAEEDRLLIQYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKNPCEAAEKAKIRSSRRQQFQQQQLQLKQMQVQQQHQQQQQQQLQFNLDMKGIINLLEENDHRVPSISQETQEMVNMYPNTSEQQGYFYSMFNVNDNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVAPFC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1302 266 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Ssu7g1302 266 Coils Coil 146 166 - -
Ssu7g1302 266 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Ssu7g1302 266 CDD SANT 24 69 IPR001005 -
Ssu7g1302 266 Gene3D - 22 74 - -
Ssu7g1302 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Ssu7g1302 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 259 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu7g1302 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Ssu7g1302 266 PANTHER MYB TRANSCRIPTION FACTOR 1 259 - -
Ssu7g1302 266 CDD SANT 79 120 IPR001005 -
Ssu7g1302 266 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Ssu7g1302 266 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Ssu7g1302 266 Gene3D - 79 123 - -
Ssu7g1302 266 SMART sant 74 122 IPR001005 -
Ssu7g1302 266 SMART sant 21 71 IPR001005 -
Ssu7g1302 266 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1302 Ssu-Chr7 28219361 28220545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1302 17 266 MYB Transcription Factor Family AT3G24310 56.089 3.25e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1302 Myb_DNA-binding 6.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1302 K09422 - gmx:100813935 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1302 7 28219361 28220545 Ssu7g1302 7 28219361 28220545 ECH