Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1298 atggaGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAGGAGGTTGATATGGACGCTGACGCTGAACAACAAGACGAGCAACTTCCCCCCAATCACACAACCAAGGAATTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAAGAAGCTAGCGCCCTCCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCCGGTTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATTCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTACAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTCACGATACTGACAGATAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCCAAGCGTACAAATATTCCTGGAATGAAGCAGTATCCTGGAAGAAGACCTACTGGTTTCCGACCTAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTGCCAAGGTATAGAAGACCCACTCGATACAGGCCATACTAG 645 0.4713 MEQEEHEVYGADIPDEEVDMDADAEQQDEQLPPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYPGRRPTGFRPRRPFMPAPFYPPYGYGRVPRYRRPTRYRPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1298 214 MobiDBLite consensus disorder prediction 1 88 - -
Ssu7g1298 214 SUPERFAMILY RNA-binding domain, RBD 80 187 IPR035979 GO:0003676
Ssu7g1298 214 CDD RRM_II_PABPs 91 162 - -
Ssu7g1298 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 213 - -
Ssu7g1298 214 SMART rrm1_1 91 162 IPR000504 GO:0003723
Ssu7g1298 214 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 213 - -
Ssu7g1298 214 Coils Coil 40 67 - -
Ssu7g1298 214 MobiDBLite consensus disorder prediction 1 26 - -
Ssu7g1298 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Ssu7g1298 214 MobiDBLite consensus disorder prediction 32 66 - -
Ssu7g1298 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Ssu7g1298 214 Gene3D - 11 170 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1298 Ssu-Chr7 28166732 28174464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1298 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 3.42e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1298 K14396 - gmx:100527545 324.324