Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1293 ATGTCGGATGCGCCAACGAGCCCGAGTCACGAGAGTGGGGGCGAGCAAAGCCCGCGTGGTTCATCATCCGGTGCGAGGGAGCAAGATCGTTACCTTCCCATTGCCAACATCAGCCGCATCATGAAGAAGGCGTTGCCTCCCAATGGCAAGATTGCGAAGGACGCGAAAGACACCATGCAAGAATGCGTTTCTGAATTCATCAGCTTCGTTACCAGCGAGGCTAGTGAGAAATGccagaaagagaagagaaagacaaTCAATGGAGACGATTTGCTATGGGCCATGGCCACTTTAGGATTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTGGGAAGGTACAGAgagGCGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGCTAGACCTGATCAAGTTGGCCTTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTAACTTGCAGGTAATACTCTTTCTGTCTCTGTCTCTCTTGAATGCATGGATgctcaaattattttcttttaccaaaCACGTGCAAGCTCAATTATGGAGATTCAAAAAACAAAGTTAA 582 0.4467 MSDAPTSPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFVTSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLGRYREAEGDTKGSARSGDGSARPDQVGLAGQNAQLVHQGSLNYINLQVILFLSLSLLNAWMLKLFSFTKHVQAQLWRFKKQS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1293 193 MobiDBLite consensus disorder prediction 1 24 - -
Ssu7g1293 193 SUPERFAMILY Histone-fold 28 141 IPR009072 GO:0046982
Ssu7g1293 193 MobiDBLite consensus disorder prediction 1 31 - -
Ssu7g1293 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu7g1293 193 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Ssu7g1293 193 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Ssu7g1293 193 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Ssu7g1293 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Ssu7g1293 193 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 153 - -
Ssu7g1293 193 Gene3D Histone, subunit A 18 153 IPR009072 GO:0046982
Ssu7g1293 193 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1293 Ssu-Chr7 28060785 28063017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1293 9 165 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.886 1.79e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu7g1293 CBFD_NFYB_HMF 1.2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1293 K08065 - gmx:100779577 303.138