Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1274 ATGGCAACAGGATCCAAGTTTTTGGACAATGCAATTATAAGAGGTTCTCACTCTCTCACTGCCTCTAACCATGTTCATGTGTTAAGAAGTGGGGTAAACTCATCAATAGCGTCATCACCTGAAAAGCTTCTTTCATGTTCAAATCCTACATCAATGAAAGAAGAGGCACCTTTAGCCACTTGGATTAGTCATATCCCTGCAAAGTTCAATGGCCATGAAGACATCCAGAATGGCAAAGagaaaaaccaatccaattctATCCTCCCAGCCTCAGATATAAAAAACAGCTCTATTCCTCTAAATCTCTTGGAAACTCTCCCACCATTAACTATAGCACCAGTTTTTGATGAGCCAGTGGCTTCTTTAGCATCTTCTTCTGCCACACCCAATTTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCCATGGTGTACTCATCATCCTCAAATATCAAAGCTGGTGAAGTGATGTCAGCAACTTCAGACCCCTCATATCATGTGCCTCAGTTTGGACAAAACCAGCATCAAGCAGGTAATGATGCACACAAAATGAATAAGAACCTAACAAATTCGCGGTCCAACTCTTTCCATGAGAATTGGTTGAGTACCACTAGGACTCAGCCTATGAAGTGTGCCGGAAGAGGCAAGCTGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACTGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTTCCTGATCTCAAGCATGTAATTCAGGCCAATTCTCTGAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTTCAAGCAATATCACAAGGTGTTTCTTCTCATAGGAAGCACACTGATTCACCAGCAGGGTCAAGCAATAAGCACACCGATGAGAATGCCAAATTGAAAAGTTTAAGTAGCAAGGATTCAACCATAAGGGTTGGATCTGAGATTACTGAGAGAAGCAAAAGTACACTCCAAGATATATCAGATGTGGAAGCTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTAGTCTCTAATTCATGA 1152 0.4167 MATGSKFLDNAIIRGSHSLTASNHVHVLRSGVNSSIASSPEKLLSCSNPTSMKEEAPLATWISHIPAKFNGHEDIQNGKEKNQSNSILPASDIKNSSIPLNLLETLPPLTIAPVFDEPVASLASSSATPNFPNLTLFLQEPSMVYSSSSNIKAGEVMSATSDPSYHVPQFGQNQHQAGNDAHKMNKNLTNSRSNSFHENWLSTTRTQPMKCAGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKHTDSPAGSSNKHTDENAKLKSLSSKDSTIRVGSEITERSKSTLQDISDVEAVQLSRMPSLDMDIIWDELLVSNS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1274 383 CDD AP2 216 276 IPR001471 GO:0003700|GO:0006355
Ssu7g1274 383 MobiDBLite consensus disorder prediction 313 330 - -
Ssu7g1274 383 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Ssu7g1274 383 MobiDBLite consensus disorder prediction 303 334 - -
Ssu7g1274 383 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Ssu7g1274 383 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 382 - -
Ssu7g1274 383 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
Ssu7g1274 383 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Ssu7g1274 383 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 3 382 - -
Ssu7g1274 383 Pfam AP2 domain 218 266 IPR001471 GO:0003700|GO:0006355
Ssu7g1274 383 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Ssu7g1274 383 Gene3D AP2/ERF domain 217 275 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1274 Ssu-Chr7 27859820 27860971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1274 96 378 AP2-EREBP Transcription Factor Family AT4G13620 43.643 3.72e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g1274 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1274 - - gmx:100820013 643.654