Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1270 ATGGCTGTGCACAAAAATCTAAACCTCCATCATCTATATCTTGTGATCCTAGTAGCAGCAAAAGCAGTATCTCAACCCACTTCAGATTGCCCCCAAAGCTGTGGCAATCTTAACGTTCCATACCCTTTTGGGACACGCGAGGGTTGTTACTTGAACGACACTTTCCTCATCACTTGCTACCATAATAATAACTCTACCCCACCCATCCCTTTATTGGGAAGAGACAACATAGTAGTGCTCAACATATCACTAGATGACGGGGAAATTCTCGTTTCAAGTCCCGTAATCCACGATTGCTATGGTGCCAAACGCAATCAACTCGGTTCTAAGGAGGAAAATGGTTTCAATTTGACCCACTTTCCAATCTCACCAAGTAAGAACAAATTCACCGCACTTGGTTGTGACACAGTTGGAATATTCGTGGGTTATGATAGGAACCAAAATCATGTTGCAACAGGGTGTGTATCCCTGTGTGGcacacttgatgaaatcacaAGTAAGAATGGATCGTGTGGTGGCACTGGCTGTTGCCAAATTAGCGTACCCGATGGAGTACTATTATTTGGTTTTGCAATGCAAACACGGAGTTGGAACAACCACTCCACCGTACGTGACTTCAATCCTTGTAGCTATGCGTTTACTGTTGCGGAAGGCCATTACAACTTCAAAGCAACAAATCTTAAGAACCTCGAAAATAGGAGGTTGCCCATGGTGCTTGATTGGGCCGTGGGAAATCAAACGTGCCGTGAGGCCCAACATCTTAGTAGCTATGCATGCAATGATAAGAACAGTGATTGCCTCGATTCAACAATTGGTTATCGTTGCAAATGCCGTAATGGTTTCGAGGGGAACCCTTACGTCTATGATGGCTGCAAagATATCGATGAATGCGCTACGAACACCAATCCGTGCCTCATCAGCAAAAGATGCCAAAACCTTCCTGGCAGTTTTAAGTGCTCATGCCCGAATAGACACGAAGGAGATGGGTTGAGAAATGGCCAAGGCTGCCGACCCAAAAAAGACAAAACCATAGGGAATCTCATACTTATAATTGGATTGAGTTTGAGCTTAAGTCTATTGGCAGTGGTTGTGGGATGCCTAAACATATACCCCCAAATCCGTGAAAAAAAGCTGctcaaaatgagagaaaattattttcaaaaaaacggTGGTATGTTATTGCTAGAACAGATAGATTCACACCATGGCTCAACTGAGAGAGCCACAATCTTCACTGTTGAGGAGCTCAAGAAAGCGACCAACAACTATGATGAGGATAGAATCATAGGCAAAGGAGGCCATGGAACAGTGTACAAAGGAATATTATCAAATGGCAGGGTTGTTGCCATCAAGAAGTCCATGGTTTCTAACCAAAGTGAGATTGAGCAATTCATCAACGAGGTGGTTGTGCTTTCTCAAATCAACCATAGGAACGTTGTCAAACTACTAGGTTGCTGTTTAGAAACAGAATTTCCCTTGCTTGTCTATGAGTTCATCACTAATGGGACCCTTTGTGAGCATCTACATTTTGAAGGTCAGGCAcgcaataataataacaaactttCATGGACATCACGTTTAAGAATTGCAGCAGAGACCGCAGAAGCTCTTGCATACTTGCATTCTGCTGTCTCTACACCAGTCATACATAGAGATGTTAAAACTGCAAATATTCTTCTAGATGAGAATCTCACGGCCAAGGTTTCTGACTTTGGAGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAGTTAACCACTTTGGTGCAAGGAACGTTGGGTTACCTTGACCCGGAGTACTTCCAAACAAGTCAGTTAACTGAGAAGAGTGATGTTTATAGTTTTGGTGTTGTCCTTGCAGAACTATTAACAAGTAAGAGGGCACTTTCATTTCTTAGGCCTGAGATTTATAGAAATTTGTCTATGTATTTTGTTTCTACAGTGAATGAGGGTCGCTTGGATCAAATCTTGGACAATGAAATTGTGAGTGATGCAAGTGTTGAGTATATAATAGAAGTTGCTAACCTAGCCAAAAGGTGTCTTCGGCTGAAGGGAGAGGAAAGACCAGGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGGTCATGGAAAAACATTCATTAGGGGGAGCAAATGATGCATCCCAAGAAGAGAGAGAGTACTTTCTCAAAGCACGTTCGCTCATTAACATCGTTGATCATGGAGATGGTACTAGTGGTAGCAACACAATTTCTAAGTTTCATAGTTTGCAAATCCAGAAATTGGAACCACCAGGGGACGGACGATAA 2289 0.4159 MAVHKNLNLHHLYLVILVAAKAVSQPTSDCPQSCGNLNVPYPFGTREGCYLNDTFLITCYHNNNSTPPIPLLGRDNIVVLNISLDDGEILVSSPVIHDCYGAKRNQLGSKEENGFNLTHFPISPSKNKFTALGCDTVGIFVGYDRNQNHVATGCVSLCGTLDEITSKNGSCGGTGCCQISVPDGVLLFGFAMQTRSWNNHSTVRDFNPCSYAFTVAEGHYNFKATNLKNLENRRLPMVLDWAVGNQTCREAQHLSSYACNDKNSDCLDSTIGYRCKCRNGFEGNPYVYDGCKDIDECATNTNPCLISKRCQNLPGSFKCSCPNRHEGDGLRNGQGCRPKKDKTIGNLILIIGLSLSLSLLAVVVGCLNIYPQIREKKLLKMRENYFQKNGGMLLLEQIDSHHGSTERATIFTVEELKKATNNYDEDRIIGKGGHGTVYKGILSNGRVVAIKKSMVSNQSEIEQFINEVVVLSQINHRNVVKLLGCCLETEFPLLVYEFITNGTLCEHLHFEGQARNNNNKLSWTSRLRIAAETAEALAYLHSAVSTPVIHRDVKTANILLDENLTAKVSDFGASKLVPLDQTQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTSKRALSFLRPEIYRNLSMYFVSTVNEGRLDQILDNEIVSDASVEYIIEVANLAKRCLRLKGEERPGMKEVAMELEGIRVMEKHSLGGANDASQEEREYFLKARSLINIVDHGDGTSGSNTISKFHSLQIQKLEPPGDGR 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1270 762 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Ssu7g1270 762 SMART serkin_6 423 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1270 762 CDD STKc_IRAK 429 700 - -
Ssu7g1270 762 ProSiteProfiles EGF-like domain profile. 293 328 IPR000742 -
Ssu7g1270 762 Pfam Wall-associated receptor kinase galacturonan-binding 30 91 IPR025287 GO:0030247
Ssu7g1270 762 ProSiteProfiles Protein kinase domain profile. 423 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1270 762 SUPERFAMILY Protein kinase-like (PK-like) 406 698 IPR011009 -
Ssu7g1270 762 SUPERFAMILY EGF/Laminin 293 328 - -
Ssu7g1270 762 SMART egfca_6 261 292 IPR001881 GO:0005509
Ssu7g1270 762 SMART egfca_6 293 337 IPR001881 GO:0005509
Ssu7g1270 762 SMART egf_5 247 292 IPR000742 -
Ssu7g1270 762 SMART egf_5 296 337 IPR000742 -
Ssu7g1270 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Ssu7g1270 762 ProSitePatterns Calcium-binding EGF-like domain signature. 293 319 IPR018097 GO:0005509
Ssu7g1270 762 ProSitePatterns Protein kinases ATP-binding region signature. 429 452 IPR017441 GO:0005524
Ssu7g1270 762 Pfam Protein kinase domain 423 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1270 762 Gene3D Transferase(Phosphotransferase) domain 1 499 722 - -
Ssu7g1270 762 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 720 IPR045274 GO:0007166
Ssu7g1270 762 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 18 720 - -
Ssu7g1270 762 Gene3D Laminin 245 336 - -
Ssu7g1270 762 Gene3D Phosphorylase Kinase; domain 1 392 498 - -
Ssu7g1270 762 CDD EGF_CA 293 328 - -
Ssu7g1270 762 Pfam Calcium-binding EGF domain 293 326 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1270 Ssu-Chr7 27780500 27785326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1270 1 753 Receptor kinase-like Gene Family AT1G21230 44.488 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Ssu7g1270 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1270 - - vun:114190859 1139.79