Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1266 ATGACGGATGCCACCGTAGCCGAGCAATGGAGCGACGTGCCGTTTAGGATGGACGACGCGGACGACATGATCATCTTCAACTCCCTCAACGACGCCCTTTCGCACGGTTGGTCTTTGTCCGATTGCACGACAGCAAAACCGGAAAACGACGCCGCAGCGAGACCATCACCAGCTCGCGAAAGCAGTTACCCCGGTAACGACGATTCCAAAGCTGTCGTTTTGCCGcataagaagaaagagaagaagagcaTGGGAACGTGCTACAGAGGAGTGAGGCAAAGACCGTGGGGAAAGTTCACAGCCGAGATTCGCGACCCGGCTCGAAACGGCGCGAGGGCGTGGCTCGGCACTTACGAAACGGCTGAGGAGGCGGCTTTGGCTTATGATCGAGCCGCGTTCAAGCTACGCGGCTCGAAAGCTTTGGTGAACTTCCCGCACCGAATAGACTTCAATGAGCCGCCTCCGGTGAGAGTCACGGCTAAGAAACGGAAAGCAGCGGCTTCGGTGAAGCTGAGTCGGAGTTGA 525 0.5524 MTDATVAEQWSDVPFRMDDADDMIIFNSLNDALSHGWSLSDCTTAKPENDAAARPSPARESSYPGNDDSKAVVLPHKKKEKKSMGTCYRGVRQRPWGKFTAEIRDPARNGARAWLGTYETAEEAALAYDRAAFKLRGSKALVNFPHRIDFNEPPPVRVTAKKRKAAASVKLSRS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1266 174 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Ssu7g1266 174 PRINTS Ethylene responsive element binding protein signature 127 147 IPR001471 GO:0003700|GO:0006355
Ssu7g1266 174 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Ssu7g1266 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 8 163 - -
Ssu7g1266 174 PANTHER DNA-BINDING DOMAIN 8 163 IPR044808 GO:0003700|GO:0009873
Ssu7g1266 174 CDD AP2 88 146 IPR001471 GO:0003700|GO:0006355
Ssu7g1266 174 MobiDBLite consensus disorder prediction 71 87 - -
Ssu7g1266 174 Pfam AP2 domain 86 137 IPR001471 GO:0003700|GO:0006355
Ssu7g1266 174 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Ssu7g1266 174 SUPERFAMILY DNA-binding domain 87 147 IPR016177 GO:0003677
Ssu7g1266 174 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Ssu7g1266 174 MobiDBLite consensus disorder prediction 46 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1266 Ssu-Chr7 27701346 27701870 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1266 1 169 AP2-EREBP Transcription Factor Family AT2G44840 47.929 1.88e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g1266 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1266 K09286 K13432 gmx:102664672 233.032