Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1264 ATGGCCACATCAGAAGAAACTTCAACTTTAAAACTGTTGCACCAGTATCTCTTGGGGGATATTTCAGAGGGGGATATTTCAGAACCCTTTCTCACCAATCTAATTCCTGTAAAACTTGAAGACCCCTCATCAGAACTTGATTTGGGTTCAAGCTTCTCAGAACAAAGCAGCTTCTGCACGTTTCTAGAATGCTTCGATTTTGAAGCAGACACAGAAGTGGCAGGTCTCACATCTCACAAGGTCCAAAACTCCATTGCAGCAAGTCAACCCCAGAAGTTGGATTTGCCAGAAGAACCGATGGTGTCAGGGAAAAAGGAAGAAGCAACATGTTATGAGGCAAGGCGTTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATCCGTGACCCCAGAAAGAAAGGGAGCAGGGTGTGGCTAGGCACATTTGACAGTGAGGTTGATGCTGCTAAGGCTTATGATTGTGCTGCATTTAGGATAAGAGGTCAGAAAGCCGTGTTGAATTTCCCTCTGGAGGCTGGAAAATCTCACCCAGACCCCAACAGTTGTGGCAAGAAAAGGAGAACAGAGTACACAACACCTGCCACAAGTTCAAGTCATGTTATGTCATGA 621 0.4622 MATSEETSTLKLLHQYLLGDISEGDISEPFLTNLIPVKLEDPSSELDLGSSFSEQSSFCTFLECFDFEADTEVAGLTSHKVQNSIAASQPQKLDLPEEPMVSGKKEEATCYEARRYRGVRRRPWGKFAAEIRDPRKKGSRVWLGTFDSEVDAAKAYDCAAFRIRGQKAVLNFPLEAGKSHPDPNSCGKKRRTEYTTPATSSSHVMS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1264 206 CDD AP2 123 173 IPR001471 GO:0003700|GO:0006355
Ssu7g1264 206 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Ssu7g1264 206 PRINTS Ethylene responsive element binding protein signature 155 175 IPR001471 GO:0003700|GO:0006355
Ssu7g1264 206 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
Ssu7g1264 206 MobiDBLite consensus disorder prediction 174 206 - -
Ssu7g1264 206 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700|GO:0006355
Ssu7g1264 206 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Ssu7g1264 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 193 - -
Ssu7g1264 206 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Ssu7g1264 206 MobiDBLite consensus disorder prediction 190 206 - -
Ssu7g1264 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 193 - -
Ssu7g1264 206 SUPERFAMILY DNA-binding domain 115 175 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1264 Ssu-Chr7 27675461 27676081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1264 1 193 AP2-EREBP Transcription Factor Family AT5G07580 41.000 5.47e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g1264 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1264 - - gmx:100306125 319.316