Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1260 ATGGCAGGGAACTTCAGATTCACAATGGACCAGAAGGATATCGTTAGATTCTTGACTACAACTATTGATAGTTACATTCAAGATCGGTTAATCAACAAAGAACAGAGAACCCAGCACAAGGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAGGACACTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGCTTGCCAGACTCGATTATGCTGAAAAGATGTTGCAAGTGTGTGCAATGCTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAATTACTACCTCTCAGCTTGGGCACACCTAAATTTATCCTACTTATGGAAGTTGAGGAACAACATTCAAAATTGTGTTTCCCATGTTCTTGAGATGTTCATTGTTGATCCTTTCTTCTCTCGGATTGATTTTGCTCCTGAATTCTGGAAAAGCCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCTGAGGAGAGGCATAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCtgattttgatcaatttttcaATGAGTCTTTGGTATTTTCTATGAGGCCACATCAATTAGACAAATTGCAAAAGCTGGAAAAGCTTTATGGAGAATCATTGGATGAGAACACACGGCTATatgcaaaatattataaagattgCATGAATTCTGATTCCACTTCAGGCAAGAAGGTGGCTCCTATGTTGCCTATTGCTGAGCCACCAATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTcctgattttgtaaaatttggtcCAATTTTGCCCAAGAGTGCTGGCTTTTCTTTGATATCAAGATCTAAAGATGGTGTAAGTGAAACAAACAGAGAGAATTCAACTTCCAGCCATTCAAAGGTGGAGAAATCATCCATATGGGATGCTAAGGATAACATCATTGAAGAGAATGAAGAAGATTCAGATTCTGAGCTTGACGATGCTTCTGTGGATTCagataacaaaaacaatattttctcaCCAGGAATAAGGATGGTGAAGGATGAGGATATTGAGCCAAAGGTGCATCTATCAAACCAGAAGAATCAAATTCATTCTCCTAATATCTTCTCTCCCTTGGATTCCCCAAGAACTGCTCCAAATAATTCATCTACAAATCCTGATACACACAGTAAAAGAGAACCGAAGTATCTTCGCTTACTGTCTACTCGTTTGAGGGACTCAACTATTTCTGACTCTTTATCATTATCTCCGGATCATACTTTCAACTCTGATAACGAAGTAATGGTCTTGAAGAATATTCAGAGGAAAAACAATGACCAAACACTAAGTATGAATCGTGACAATGGGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTAATGAAGGAAATCAAAGCTGCATTTCGTTGCCAAAATTAGAGAAGCTGACAATTGGATCAAAACCACCCAAAGACTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCTGCAAATATATTACCAAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAGAACCCTGAACTAGCTCAAGAATTCTCGAATTCTAACACACCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTCCCAATGCTCTCCATTATACAAAGAACAACTGATTCACCAAGTCATAAGagcaaagaaaattatattagacAAAGGAGCAACAGATTTATGCGAGTTGTTGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTAGAAACAATTATGAATTCCTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCAAGAATGTGAAGAAGCTGTATTGGAAATAGCAAGATTATGGAAAGATTCAAAGACTGATCCTCAGATTCATGCTTATTTATCAAAGCCAACTATCATAAATGGTTTGGTGGAAATACTTTCAGCTTCTCTGAATAGAGAAGTTTTAAGAACATCAATTTATATTCTGACTGAGCTAATCTTTTTAGATGAAAGTGTTGGAGAAACACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGATGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTCAGCACATGAACTTATACCATCTCTTGTGCAAGTGATTCAGAACAAAAATGAGGAGTCAGATGACTTTCAGTTAGTTATAGATCCCAAAGATGCTGCCATAGCAATTCTTGAGCAAATTTTAATAGGAGGGGATGAGTATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGAATTCCAGCCTTAGCGAAGTATTTGGAGAGGTTGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAGGTTGCAAGAGCTTGATAGCAAACAGAATTGAATTGTCTCCTGTTCTTGAATTATTTCACGCTGGAAATGATAGTGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTTAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCCAGCCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCTCGAAAGATGAGCATCTACAGGGAAGAAGCTGTAGAGACACTAATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTGGATGTTTTACTATTTCTTATTGGACATGTAACTTCCTCGGGGAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGTAGGATTTGATAAACCTTACAATGATTTAATTAAGGCCGAGCAGTTGGGACAGTATGACAATGATTCAATGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAACCATGAAAATGGTTCAATATTTCAAGCCTTGGAAGAATGCCTAAGGAGTAATTCCTTAAGGATGGCAAAATCTGGCCTTGTTCTTGTCTCATGGCTCACATACATGCTCTCTACTCTTCCTGATACTGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTGCAATCATCTAAGAACCTGGAGGAAAAGATCCTGGCTACCCTAgctttgaaaactttcattagTGATCCAATTGCTCACGAAACGCTTAGAGCTTATGCTAAAAACATCTATAGAACTATGAGGAAGCTGAAGAAATATTCAGCAGTAGCAGTTGATATTATGAAAGCCATACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTATATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCGAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCTCTCTGTTCTTCAGATGATAGGCTATACACTGGCTCCTTAGACAAAACCATCCGGGTTTGGAACATCAAACCAGATGAGATTAAATGTATAGATGTTCATGACGTTAAGGAGCCAGTGTATGAGCTGACAGCCAATGCCAAATTGGCATGCTACGTATCTCAAGGAACTGGAGTTAAGGTTTTTAATTGGTCAGAAGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCAGTTGCTGGGGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTccaaatatacatcaaattcATTCTTCTCTGGTACAAGAAAGTTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGGTTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCAACTGGACTTGACATTTATCGCGTAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACTATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCATTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4449 0.3846 MAGNFRFTMDQKDIVRFLTTTIDSYIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNNIQNCVSHVLEMFIVDPFFSRIDFAPEFWKSLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLVFSMRPHQLDKLQKLEKLYGESLDENTRLYAKYYKDCMNSDSTSGKKVAPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSAGFSLISRSKDGVSETNRENSTSSHSKVEKSSIWDAKDNIIEENEEDSDSELDDASVDSDNKNNIFSPGIRMVKDEDIEPKVHLSNQKNQIHSPNIFSPLDSPRTAPNNSSTNPDTHSKREPKYLRLLSTRLRDSTISDSLSLSPDHTFNSDNEVMVLKNIQRKNNDQTLSMNRDNGNSLGLNDSSLCESNEGNQSCISLPKLEKLTIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELAQEFSNSNTPRGSSCSPSAKDFPMLSIIQRTTDSPSHKSKENYIRQRSNRFMRVVVATSPTSVLSQAAVETIMNSLKPYISSLCTSENLQECEEAVLEIARLWKDSKTDPQIHAYLSKPTIINGLVEILSASLNREVLRTSIYILTELIFLDESVGETLNSVDSDFDCLATLLKNGLDEAALLIYQLRPVFAQLSAHELIPSLVQVIQNKNEESDDFQLVIDPKDAAIAILEQILIGGDEYSRSLNALSVISENGIPALAKYLERLEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDVLLFLIGHVTSSGKSYTEAWLLKIVGFDKPYNDLIKAEQLGQYDNDSMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLRMAKSGLVLVSWLTYMLSTLPDTGIKDVARKSLLDELINVLQSSKNLEEKILATLALKTFISDPIAHETLRAYAKNIYRTMRKLKKYSAVAVDIMKAILNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYMNGQVLSGHSDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSDDRLYTGSLDKTIRVWNIKPDEIKCIDVHDVKEPVYELTANAKLACYVSQGTGVKVFNWSEAPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSNSFFSGTRKLLGKQTIHSLQIHDGFLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIYRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1260 1482 ProSiteProfiles U-box domain profile. 506 581 IPR003613 GO:0004842|GO:0016567
Ssu7g1260 1482 SUPERFAMILY RING/U-box 506 579 - -
Ssu7g1260 1482 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1482 - -
Ssu7g1260 1482 ProSitePatterns Trp-Asp (WD) repeats signature. 1258 1272 IPR019775 -
Ssu7g1260 1482 Coils Coil 1110 1130 - -
Ssu7g1260 1482 MobiDBLite consensus disorder prediction 335 349 - -
Ssu7g1260 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1241 1273 IPR001680 GO:0005515
Ssu7g1260 1482 Gene3D - 640 1010 IPR011989 -
Ssu7g1260 1482 Pfam WD domain, G-beta repeat 1450 1479 IPR001680 GO:0005515
Ssu7g1260 1482 Pfam WD domain, G-beta repeat 1214 1229 IPR001680 GO:0005515
Ssu7g1260 1482 Pfam WD domain, G-beta repeat 1242 1271 IPR001680 GO:0005515
Ssu7g1260 1482 SMART Ubox_2 510 574 IPR003613 GO:0004842|GO:0016567
Ssu7g1260 1482 SUPERFAMILY WD40 repeat-like 1214 1481 IPR036322 GO:0005515
Ssu7g1260 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1448 1482 IPR001680 GO:0005515
Ssu7g1260 1482 SUPERFAMILY ARM repeat 619 1143 IPR016024 -
Ssu7g1260 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1216 1229 IPR001680 GO:0005515
Ssu7g1260 1482 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1482 - -
Ssu7g1260 1482 Gene3D - 1180 1482 IPR015943 GO:0005515
Ssu7g1260 1482 SMART WD40_4 1191 1229 IPR001680 GO:0005515
Ssu7g1260 1482 SMART WD40_4 1439 1480 IPR001680 GO:0005515
Ssu7g1260 1482 SMART WD40_4 1234 1271 IPR001680 GO:0005515
Ssu7g1260 1482 MobiDBLite consensus disorder prediction 304 417 - -
Ssu7g1260 1482 MobiDBLite consensus disorder prediction 317 334 - -
Ssu7g1260 1482 PRINTS G protein beta WD-40 repeat signature 1216 1230 IPR020472 -
Ssu7g1260 1482 PRINTS G protein beta WD-40 repeat signature 1258 1272 IPR020472 -
Ssu7g1260 1482 PRINTS G protein beta WD-40 repeat signature 1467 1481 IPR020472 -
Ssu7g1260 1482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1241 1273 - -
Ssu7g1260 1482 MobiDBLite consensus disorder prediction 379 410 - -
Ssu7g1260 1482 CDD RING-Ubox_PUB 511 553 IPR045210 -
Ssu7g1260 1482 Pfam U-box domain 508 578 IPR003613 GO:0004842|GO:0016567
Ssu7g1260 1482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 589 IPR013083 -
Ssu7g1260 1482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1448 1482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1260 Ssu-Chr7 27565175 27572261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1260 497 677 U-box Gene Family AT1G23030 34.066 1.49e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1260 - - gmx:100776142 2682.9