Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1251 ATGATGAATAGTTCAGAGGAGTCCGTGTTACTGCTTGTGAGCTTTATTATTCTAACCCTTATCGTAACATTTGCCGCTTACATGTGCTCTTCTAATGTTCCGCGCACTATTCCATCTGCGCCCGTTAGTGACACGCACTCCAACCACACCACAATCACTGTGGAATCAACTGAGCCAGGCTTAGATGAGAGTGTGCGCAGCTATCCAAGTCTCCAATTATCCAAAGACAAATTGTGTAGTGGCACTAGCAGTAGCTCTTCAAGTTGTTCCATATGCTTGATGGATTACAAAGAATGTGATTCCTTGAGAGTGCTGCCCGGTTGTGGTCATTTCTTCCACGTCAAGTGTGTTGATCCCTGGTTGAGAATCAATTTGACCTGCCCGGTTTGTAGAACCCCAATAGCCCTCGCAGATATATGTAAAAACTTTGCACTAGTTAAGGAATTATTTCGTATTTAA 459 0.4357 MMNSSEESVLLLVSFIILTLIVTFAAYMCSSNVPRTIPSAPVSDTHSNHTTITVESTEPGLDESVRSYPSLQLSKDKLCSGTSSSSSSCSICLMDYKECDSLRVLPGCGHFFHVKCVDPWLRINLTCPVCRTPIALADICKNFALVKELFRI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1251 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 136 IPR013083 -
Ssu7g1251 152 SUPERFAMILY RING/U-box 88 136 - -
Ssu7g1251 152 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 142 - -
Ssu7g1251 152 Pfam Ring finger domain 88 131 IPR001841 -
Ssu7g1251 152 PANTHER RING-H2 FINGER PROTEIN ATL67 7 142 IPR044289 GO:0016567|GO:0016740
Ssu7g1251 152 SMART ring_2 89 130 IPR001841 -
Ssu7g1251 152 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1251 Ssu-Chr7 27480050 27480508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1251 62 132 C3H Transcription Factor Family AT5G06490 50.000 5.16e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1251 - - vra:106770594 208.764