Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1250 ATGAACAATAGCACCAACAACAAGGACGACAGTGGTTTTGACGTAAGTGGGTTCACATATGGCATAGCTTTTGTAATTGGCTTGATCTTCTTACTTGTCACCGTGGCTTTTGCCTGTGTGCGCCTTCGCATGGCTCGTGGTCCTAATATGCTCAATATTTTGGCTGGTGTTACACCATCTCGTCACGCAGGAGAAGAAGACTCAGCTGAACAAGGCCTAGGCCTGGGCCTGGGCCTTCATCACATTGACACAAGTTTTGAAAGCTATCCCAAGCTGCTTTACTCTCAAGTAAAGAAGGGTTCAAGCAGTACTACTTCCTCTAGCTGCTCCATCTGCTTAGGGGACTACAAAGAAAGTGACATGTTGAGGTTACTTCCTCACTGTGACCATCTTTTCCACCTTGCTTGTGTTGATCCATGGCTTAGGTTGCATTCAACTTGTCCCATATGTAGAAAATCATCGCTTCAGGCATCACATAGTGCCTCCAATTAA 492 0.4573 MNNSTNNKDDSGFDVSGFTYGIAFVIGLIFLLVTVAFACVRLRMARGPNMLNILAGVTPSRHAGEEDSAEQGLGLGLGLHHIDTSFESYPKLLYSQVKKGSSSTTSSSCSICLGDYKESDMLRLLPHCDHLFHLACVDPWLRLHSTCPICRKSSLQASHSASN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1250 163 Pfam Ring finger domain 108 151 IPR001841 -
Ssu7g1250 163 SUPERFAMILY RING/U-box 89 155 - -
Ssu7g1250 163 CDD RING-H2_PA-TM-RING 111 151 - -
Ssu7g1250 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 157 IPR013083 -
Ssu7g1250 163 SMART ring_2 109 150 IPR001841 -
Ssu7g1250 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 - -
Ssu7g1250 163 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Ssu7g1250 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1250 Ssu-Chr7 27477800 27478291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1250 17 157 C3H Transcription Factor Family AT5G06490 38.608 1.01e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1250 - - gmx:102663718 250.751