Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1247 ATGGCACCAAATCCATGCCACTATTTATATGCAACAGCAAAAAAGCTTCCTGAGTTTCAGCTTCTACCTGTTTTTCTCTTACTTCAGGCTTCTTCTGGCTCCTTCTTGCTTCTTTCTATGGGGTATCTCTTGCTGCTTCTATGTTTTTCTACCTTGTTGTATGCTGCTTCTGCCTTGAACTCTGATGGGTTGGCTTTGTTGTCCCTCTTGAGGGACTGGAGTGTTGTGCCTGGTGACATAAACTCTACGTGGAAGGCTTCTGATTCCACTCCATGCTCATGGGCAGGAGTGCATTGTGATCATGCCCATAATGTGGTTTCTCTAAACCTCAGTAGTTATTCAATTTTTGGTCAATTAGGACCTGATCTTGGACGTTTGATTCACTTGCAAACCATAGTCTTGTCATATAATGATCTCTTTGGAAAAATGCCCCCGGAATTAAACAATTGTAGTGTGCTTGAGCACTTGGACCTTTCTGTAAACAACTTTAGTGGAGGAATACCTGGGAGCTTCAGAAACTTGAAAAATTTGAAGCATATGGACCTCTCAACTAATCAGCTGAATGGTGAAATTCCTGAATCCTTGTTTGAAATTCCTTACCTGGAAGTAGTGTATCTTAACAACAACAGTTTAAGTGGTTCCATTCCCACAAGCATTGGGAATATCACTAAGCTTGTTGAACTGGATCTTTCTAATAATCAGCTGTCAGGGACAATTCCCATATCCATTGGAAATTGTAGTAAGTTAGAGTATCTGTATTTGGGAGAGAATCAATTACAGGGAGTTATTCCTGAGAGTctaaataatctcaaaaatctttatgatttaaatatcgGTGATAATAATCTTGGAGGTACTATTCAACTGGGATCTGGAGATTGCAAAAAGTTATCTTATTTGAGTCTTTCTTACAATGCATTTAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGTGGCCTAATAGAGTTTTATGCTGCAGGGTGTAACTTAGTTGGCAGTATACCATCAACCTTAGGCCTCCTGCACAAGCTTTCTATTCTAATAATTCCGGAGAACCTATTTTCTGGGAAAATACCTCCACAGATTGGCAATTGCAAATCACTGGAAGAGTTGCATTTGAATTCCAACGAACTTGAGGGAGAAATTCCGAGAGAATTGGGAAACTTGAGTAAATTACGTGATCTTAGATTGTATCAAAACCAATTGACAGGAGAAATTCCACTTGGGATATGGAAAATTCAAAGCCTTGAGCATATCCTGGTGTACAATAACAGCCTTTCAGGTGAGCTACCTTTTGAGATGACAGAGCTCAAACATCTTAAGAATATCACCTTGTTTAACAACCAGTTCTCTGGTGTCATACCTCAAAGCTTAGGAATCAATAGCAGTTTGTTGGAGTTAGACTTcatgtataataatttcaatGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAACTGGCCAAGCTGAATATGGGTAGCAATCAATTTTATGGTAGCATACCTCCTGATGTAGGAAGATGTACAACTCTTACAAGGGTGAGACttgaacaaaataatttcaGTGGGCCTCTTCCTGATTCTGAAACTAATCCAAATCTCTCTTACATGAGCATCAGCAACAACGACATCAGTGGAGCAATTCCACCAAGTTTGGGAAACTGCACAAATCTCTCTCTTTTAGATTTATCCATGAACAGCTTGACAGGTCTTGTACCCTCAGAGCTGGGAAACCTTGTGAATCTCCGGTCTTTGGGTCTTTCTCACAATAACTTGGAAGGTCTTTTGCCACATCAGCTGTCAAACTGTGCCAAAATGATTAAGTTTGATGTCGGATTCAATTCCTTGAATGGCTCGTTTCCGTCAAGTTTTCGGAGCTGGACAACATTAACAACTCTAATTCTCTCAGACAATCATTTTAATGATGGTATCCCAGCTTTCTTGTCAGAATTTAAAAAGCTCAACGAGTTGCAACTTGGTGGAAATATGTTTGGAGGAAACATTCCTAAATCAATTGGAGAACTGGTGAATTTGAGATACGAGCTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCCGGGGAGATTGTAAACCTGAAGAATCTGCTAAAACTGGATCTATCTTGGAACAATTTGACAAGAAGTATACAAGTTCTTGATGAGCTCATTTCATTATCTGAATTCAACATCTCATATAATACTTTTGAAGGTCCTGTGCCACAACAGCTAACAAATTTACCAAAttcttctttatcatttttgggCAATCCTGGCCTATGTGCCAGTTTTCCATCATATGGCTTGAATCTCACTGAGAGCGGCTATTTAAGGCCATGTGACAGTCAttcaaaaaagtcaaaaaagctCAGTAAAGTTGCAACTGTGATGATAACACTTGGATCCTCAATATCTGTTGTTCTGCTGCTGgggttaatttatatattctttatcaGAAAAATTAAGCGGGAAGCCATAATCAATGAGGAAGCTGATTCTCCATCCCTTCTCAATAAGGTGATGGAAGCTACAGAAAATCTAAATGATCAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTACAAAGCAGCACTAGATCCAGACAAAATTTTGGCTATAAAGAAGTTTACATTTGCTCATGATGAAGGGAAAAGCTCAAGTATGATAAGAGAAATTGAAACCCTTGGAAATATTAGGCATCGAAATTTGGTCAGATTGGAAGGGTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGCCTTCATGATGCTTTGCATGAGAGGAATCCACCTCACTCCTTAGAATGGAATGTCCGGAATAAGATAGCTCTTGGAATTGCTCATGGATTAGCTTATCTGCATTATGACTGTGATCCTGTCATAGTGCATAGAGACATCAAAACAAGCAACATACTTCTAGATTCTGAAATGGAGCCTCATATTGCAGATTTTGGTATTGCCATGCTTTTGGATCAGCCTTCTACTTCAACACAGTCAACATCTGTTACTGGTACATTTGGTTATATAGCACCAGAGAAtgcttatacaacaacaaaggGTAAGGAATCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGGCATTGGATCCATCATTTATGGAAGGAACGGATATAGTTAATTGGGCTAGATCTGTCTGGGAGGAAACGGGAgttgttgatgaaattgttgattcAGAGCTTGCtggtaaaatttcaaattctgatGTGATGAAACAAGTTACCAAGGTGCTTTTGGTGGCTTTGAGATGTATAGAAAAGGATCCACGTAAGAGACCTACGATGAGGGATGTTATCAAGCATTTGTAG 3378 0.3777 MAPNPCHYLYATAKKLPEFQLLPVFLLLQASSGSFLLLSMGYLLLLLCFSTLLYAASALNSDGLALLSLLRDWSVVPGDINSTWKASDSTPCSWAGVHCDHAHNVVSLNLSSYSIFGQLGPDLGRLIHLQTIVLSYNDLFGKMPPELNNCSVLEHLDLSVNNFSGGIPGSFRNLKNLKHMDLSTNQLNGEIPESLFEIPYLEVVYLNNNSLSGSIPTSIGNITKLVELDLSNNQLSGTIPISIGNCSKLEYLYLGENQLQGVIPESLNNLKNLYDLNIGDNNLGGTIQLGSGDCKKLSYLSLSYNAFSGGIPSSLGNCSGLIEFYAAGCNLVGSIPSTLGLLHKLSILIIPENLFSGKIPPQIGNCKSLEELHLNSNELEGEIPRELGNLSKLRDLRLYQNQLTGEIPLGIWKIQSLEHILVYNNSLSGELPFEMTELKHLKNITLFNNQFSGVIPQSLGINSSLLELDFMYNNFNGTLPPNLCFGKQLAKLNMGSNQFYGSIPPDVGRCTTLTRVRLEQNNFSGPLPDSETNPNLSYMSISNNDISGAIPPSLGNCTNLSLLDLSMNSLTGLVPSELGNLVNLRSLGLSHNNLEGLLPHQLSNCAKMIKFDVGFNSLNGSFPSSFRSWTTLTTLILSDNHFNDGIPAFLSEFKKLNELQLGGNMFGGNIPKSIGELVNLRYELNLSANGLIGELPGEIVNLKNLLKLDLSWNNLTRSIQVLDELISLSEFNISYNTFEGPVPQQLTNLPNSSLSFLGNPGLCASFPSYGLNLTESGYLRPCDSHSKKSKKLSKVATVMITLGSSISVVLLLGLIYIFFIRKIKREAIINEEADSPSLLNKVMEATENLNDQYIIGRGAQGVVYKAALDPDKILAIKKFTFAHDEGKSSSMIREIETLGNIRHRNLVRLEGCWLRENYGLIAYKYMPNGSLHDALHERNPPHSLEWNVRNKIALGIAHGLAYLHYDCDPVIVHRDIKTSNILLDSEMEPHIADFGIAMLLDQPSTSTQSTSVTGTFGYIAPENAYTTTKGKESDVYSYGVVLLELISRKKALDPSFMEGTDIVNWARSVWEETGVVDEIVDSELAGKISNSDVMKQVTKVLLVALRCIEKDPRKRPTMRDVIKHL 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1247 1125 ProSiteProfiles Leucine-rich repeat profile. 704 726 IPR001611 GO:0005515
Ssu7g1247 1125 Pfam Leucine rich repeat N-terminal domain 60 100 IPR013210 -
Ssu7g1247 1125 SMART LRR_typ_2 390 414 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 174 198 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 126 150 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 581 604 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 247 269 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 702 729 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 557 580 IPR003591 -
Ssu7g1247 1125 SMART LRR_typ_2 222 246 IPR003591 -
Ssu7g1247 1125 Pfam Protein kinase domain 853 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1247 1125 SUPERFAMILY L domain-like 294 530 - -
Ssu7g1247 1125 ProSiteProfiles Protein kinase domain profile. 849 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1247 1125 Gene3D Ribonuclease Inhibitor 64 170 IPR032675 -
Ssu7g1247 1125 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 40 1124 - -
Ssu7g1247 1125 SUPERFAMILY L domain-like 502 774 - -
Ssu7g1247 1125 SMART LRR_sd22_2 390 419 - -
Ssu7g1247 1125 SMART LRR_sd22_2 174 197 - -
Ssu7g1247 1125 SMART LRR_sd22_2 581 607 - -
Ssu7g1247 1125 SMART LRR_sd22_2 222 243 - -
Ssu7g1247 1125 SMART LRR_sd22_2 246 272 - -
Ssu7g1247 1125 SMART LRR_sd22_2 702 724 - -
Ssu7g1247 1125 Gene3D Ribonuclease Inhibitor 324 434 IPR032675 -
Ssu7g1247 1125 SUPERFAMILY Protein kinase-like (PK-like) 839 1125 IPR011009 -
Ssu7g1247 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 971 983 IPR008271 GO:0004672|GO:0006468
Ssu7g1247 1125 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 40 1124 - -
Ssu7g1247 1125 Gene3D Transferase(Phosphotransferase) domain 1 926 1125 - -
Ssu7g1247 1125 SMART serkin_6 849 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1247 1125 Gene3D Ribonuclease Inhibitor 171 243 IPR032675 -
Ssu7g1247 1125 Gene3D Ribonuclease Inhibitor 244 323 IPR032675 -
Ssu7g1247 1125 Gene3D Phosphorylase Kinase; domain 1 820 925 - -
Ssu7g1247 1125 Gene3D Ribonuclease Inhibitor 435 769 IPR032675 -
Ssu7g1247 1125 SUPERFAMILY L domain-like 60 347 - -
Ssu7g1247 1125 Pfam Leucine rich repeat 534 594 IPR001611 GO:0005515
Ssu7g1247 1125 Pfam Leucine rich repeat 153 211 IPR001611 GO:0005515
Ssu7g1247 1125 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515
Ssu7g1247 1125 PRINTS Leucine-rich repeat signature 225 238 - -
Ssu7g1247 1125 PRINTS Leucine-rich repeat signature 581 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1247 Ssu-Chr7 27441075 27444871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1247 50 1125 Receptor kinase-like Gene Family AT1G73080 51.146 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu7g1247 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1247 - - gmx:100802056 1768.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1247 7 27441075 27444871 Ssu7g1247 7 27441075 27444871 ECH