Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1239 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGAGCGTTGGGCAGGAAGACATGCAGGGTGGTTCCAGTCACGCTCACCTCGGAGACCCTTGTCTTGTTTTGACTTCTGATCCCAAACCTCGTCTTCGTTGGACCGCTGACCTTCACGAACGGTTTGTTGATGCTGTCACTCAACTTGGGGGTGCTAGTAaAGCCACTCCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGATGCAAAGATGGAATGTCAGCTTCATATCTTCAAGAAAGCCCTGGTACTGATAACTCATCTCCAAAGTTACCAGCTTCTGATCCAAACGAGGGTCATGAAGTCAAGGAGGCATTAAGGGCACAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGATATATGGGCATGCTTGAGCAAGCGTGTAAGATGTTGGCCGATCAATTTATTGGGGACATAGTTATCAACACAGACAGCCAAAAATTTCAAGGGCTGGAAAGCAAAACATCCAGAAGTTCCCTAGTGGATCAAGTTGGCATTTTTCCCCCAGCGTGTACTGAGGTAGGTGGAATGCATGTTTCAGGAGTACCACCTATTCTCCAGCCTCAAGGGGCTGACTGCTCCACTGAAAGTTGCCTAACATCACTTGAGAGTCTGGGAGGGTTGACACTAGAAGGATCTCCCGGCGGATCGAAGAAGAGGATGATGAGCTTGGACTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAGCACCAGAACTCAAGGAATCCATTTAGCTCAAGTTTATCCTCCAGGAATAACTAGGTATGGCATGTAG 933 0.4716 MFSRLIHPHEGSVGQEDMQGGSSHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGMSASYLQESPGTDNSSPKLPASDPNEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLEQACKMLADQFIGDIVINTDSQKFQGLESKTSRSSLVDQVGIFPPACTEVGGMHVSGVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMMSLDSMVAPLIWSEASTRTQGIHLAQVYPPGITRYGM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1239 310 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Ssu7g1239 310 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g1239 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 310 IPR044848 GO:0003700
Ssu7g1239 310 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 310 - -
Ssu7g1239 310 MobiDBLite consensus disorder prediction 94 136 - -
Ssu7g1239 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Ssu7g1239 310 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Ssu7g1239 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Ssu7g1239 310 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Ssu7g1239 310 Gene3D - 38 96 - -
Ssu7g1239 310 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1239 Ssu-Chr7 27286233 27289059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1239 20 254 G2-like Transcription Factor Family AT3G24120 46.429 2.74e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu7g1239 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1239 - - gmx:100779871 545.814