Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1230 ATGAATgTTAAGGCTCTCTTTGGTGGTGTCAGAAAGAACCAACATGGAAGCACCAGAGGAACTCTCTTTGGGGTCCAAAGATCACGCCAACATTGTCAAAGGAAAAAGAACCAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCCAATTCTTCCACTggaggagaaagagaagaagattgcTACAATGGCGGTGATGATAACAACGACAACCAAAATGATGATATTAACAAcgacgacaacaacaacaataacaactccCCCACCACTTCGGCAGGATTACAAGGCAGCACCGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTCCTGGCACAAGGACAATCCCGGGAATCCCCGAAACACGCCAAGGAAGATGCCGGCATGAACTACGCCAAGTACAGCAGTAGAAAATTCTTGGAAGCAGCTACCTTGGGGTCTAGCAGGGGAGGGTACTATGTTTATGAATGCAAGACATGCAACAGAACTTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCCAAGGCAATGATGGCCATTGGCCAAGAGAAGAAGCAGCAACTCCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAAATCACCATTTTCCCTCCAACTGAATAATACAAAGGGGAATTTGTACcccaccaacaacaacaagtcCAAGGTGCATGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGACAGGCACTGGGAGGCCATATGAGACGCCACCGCGCACCGGTTGGAACCACCCCCACACTCTCCTTTACCCCATTGGCTTTGGGACCGGAAGAAGATCACTccagaaagaaaaggaatgtgTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCAGAAGATGATCAAAGAGAATCCAAGTTTGCCTTTGCATccaagcaacaacaacaacatggacagaaacaacaacagcaacaacaacaacaacaacaacaaacaagtCTTGCCTTCCCTGCCCCAGCTTTGGTGGATTGTCATTACTAA 1050 0.4076 MNVKALFGGVRKNQHGSTRGTLFGVQRSRQHCQRKKNQRVRPQSPIPFSITANSSTGGEREEDCYNGGDDNNDNQNDDINNDDNNNNNNSPTTSAGLQGSTDEEEDMANCLILLAQGQSRESPKHAKEDAGMNYAKYSSRKFLEAATLGSSRGGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMMAIGQEKKQQLLLSSDEEEFQLKTNKSPFSLQLNNTKGNLYPTNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTTPTLSFTPLALGPEEDHSRKKRNVLNLDLDLNLPAPEDDQRESKFAFASKQQQQHGQKQQQQQQQQQQQTSLAFPAPALVDCHY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1230 349 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Ssu7g1230 349 Pfam C2H2-type zinc finger 157 183 - -
Ssu7g1230 349 Pfam C2H2-type zinc finger 236 262 - -
Ssu7g1230 349 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 32 349 - -
Ssu7g1230 349 SUPERFAMILY beta-beta-alpha zinc fingers 157 259 IPR036236 -
Ssu7g1230 349 PANTHER ZINC FINGER PROTEIN ZAT5 32 349 - -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 1 102 - -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 39 60 - -
Ssu7g1230 349 Gene3D Classic Zinc Finger 136 217 - -
Ssu7g1230 349 Gene3D Classic Zinc Finger 218 267 - -
Ssu7g1230 349 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Ssu7g1230 349 SMART c2h2final6 158 180 IPR013087 -
Ssu7g1230 349 SMART c2h2final6 237 259 IPR013087 -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 311 339 - -
Ssu7g1230 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 259 IPR013087 -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 251 284 - -
Ssu7g1230 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 69 100 - -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 14 28 - -
Ssu7g1230 349 MobiDBLite consensus disorder prediction 296 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1230 Ssu-Chr7 27134585 27136153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1230 35 349 C2H2 Transcription Factor Family AT5G04390 41.972 3.24e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1230 zf-C2H2_6 6.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1230 - - gmx:100819786 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2473 7 48222384 48223232 Ssu7g1230 7 27134585 27136153 ECH
Ssu4g0970 4 15478605 15479441 Ssu7g1230 7 27134585 27136153 ECH
Ssu8g0622 8 10175428 10176321 Ssu7g1230 7 27134585 27136153 ECH
Ssu7g1230 7 27134585 27136153 Ssu7g1230 7 27134585 27136153 ECH