Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1224 ATGGGTCGCGAAACTGTGTTGCTTCCAGCCCCACCAACCGCTGCTAGTGCCACCACAGTGAACCCAGTGGCAGCACCATCTGCACCACCTACCTCCCTTGCTCCTGGCTTCAGGTTCCACCCAACAGACGAAGAGCTTGTTATTTACTACCTCAAGCGCAAGGTTTGTGGCAAAGCTTTCCGATTTGATGCCATATCTGAGGTTGACATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAGTCAAGGTTGAAGACCAGAGACCAGGAGTGGTATTTTTTTAGTGCATTGGACAAGAAATATGGGAATGGTGGAAGGATGAACAGGGCTACAAGCAAAGGGTATTGGAAAGCCACTGGGAATGATCGACCAGTGAAGCATGAACAAAGGAATGTGGGGTTGAAGAAAACGTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGGAAGAGGACGAATTGGGTCATGCATGAGTACAGGCTTGTTGAAGAGGAGCTAGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGagtatttcacaaaaataacataGGACCTCCAAATGGGCAACGATATGCACCCTTCATCGAAGAAGAATGGGACGATGCATCGGGAATGGTTCCAGGGGCAGAGTTTGTGGATAACGGCTCTGTTGCCCACCAACCGCGTGTTGAAGGCAATGGTGGTGTTTTATGCGCCGAAAGGAGAAATGATGTTGTACAGGACACTCAATCTATCAATAAAGGTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTACTAGCTGTGTGCAAGAGGGAAAGCATGGCCGGGTATCCATCACCtgaaaatgatgataataattgtAAGCACATGGATGAGTACCCTTCGCCTCAAACGGATAATCCAAAGCCTTTCTCTCAATACAAACGAAGGCGGCATAACTTGAACTCCAACCACTCAAATGTTTCTGGAGATTCAATCCGAACCGGCCAGGATCCGTGCTCATCTACAATAACTACCGCTGCAACCACCCTCTCAACGACCACTGCTGCTGCCACAGCCACCAACACTGCaccaaaaaaacattttctgtCTGCACTGGTGGAGTTTTCTCTGCTGGAATCCCTTGAATCAAAGGAAAGCCTCGGTATAATTAAGGCACCAGATTTTGACACTGAAAATCTAGAGTCATCCGTGCCTCCAAGCTGCGCAAAGTTCATCAAACACTTGCAGAGCGAGATGCAGAAGCTTGCAGTTGAAAAGGAGGCGATGAGGTTTGAGATGATGAGTGCACAAGCAATGATTAACATTCTCCAGTCTCGCGTCGACATTCTCAACAAAGAAAATGGGGAGCTGAAAAGCAGGATCCAAAATCCTTAG 1389 0.4651 MGRETVLLPAPPTAASATTVNPVAAPSAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKAFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHEQRNVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASGMVPGAEFVDNGSVAHQPRVEGNGGVLCAERRNDVVQDTQSINKGPFDVNKLPIETQNLLAVCKRESMAGYPSPENDDNNCKHMDEYPSPQTDNPKPFSQYKRRRHNLNSNHSNVSGDSIRTGQDPCSSTITTAATTLSTTTAAATATNTAPKKHFLSALVEFSLLESLESKESLGIIKAPDFDTENLESSVPPSCAKFIKHLQSEMQKLAVEKEAMRFEMMSAQAMINILQSRVDILNKENGELKSRIQNP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1224 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 25 460 - -
Ssu7g1224 462 SUPERFAMILY NAC domain 26 188 IPR036093 GO:0003677|GO:0006355
Ssu7g1224 462 Pfam No apical meristem (NAM) protein 35 160 IPR003441 GO:0003677|GO:0006355
Ssu7g1224 462 Coils Coil 410 458 - -
Ssu7g1224 462 Gene3D NAC domain 42 190 IPR036093 GO:0003677|GO:0006355
Ssu7g1224 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 25 460 - -
Ssu7g1224 462 MobiDBLite consensus disorder prediction 280 311 - -
Ssu7g1224 462 MobiDBLite consensus disorder prediction 1 28 - -
Ssu7g1224 462 MobiDBLite consensus disorder prediction 12 26 - -
Ssu7g1224 462 ProSiteProfiles NAC domain profile. 33 187 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1224 Ssu-Chr7 27036838 27051824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1224 1 458 NAC Transcription Factor Family AT3G10480 43.557 7.45e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g1224 NAM 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1224 - - gmx:100808783 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1224 7 27036838 27051824 Ssu7g1224 7 27036838 27051824 ECH