Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1222 ATGGCACCCCTCGGTCCGGGCTTCCGATTCCACCCCACCGACGAGGAGCTCGTCGTGTTCTACCTGAAGCGGAAGATCACCGGGAATCTCTCCCGGTACGACCACATCGCTGTCGTCGACGTGTACAAGCTGGAGCCCTGGGACCTTCCCCCTAAGTCGAAGCTGAAGACGAAGGACTTGGAATGGTACTTCTTCAGCGTGCTGGACCGCAAGTACGGAAACGGCTCGAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACCGGAAAAGACCGCCCCGTCAGCCACGGCGAGCGCACCGTCGGAATGAAGAAGACCCTCGTTTACCACATCGGCCGGGCTCCACACGGCCGTCGCACCAATTGGGTCATGCACGAGTATAAGCTTCTCGAAGAAGAATTGGCACGTGCCGGAACAGTGCTGGATGTGTTTGTGCTGTGTAGGATTTTCGAGAAGAGTGGTGCGGGGCCCAAGAATGGGGCCAAGTATGGTGCTCCGTTGGACGAGAAGGAGTGGGAtgtggaggaggaggaggaggaggagcagAAGGAGGTGGCTCCCTTACCCATTGCTGAAAATTTGGTGGCTCCCTTGCTGACTATGGCTGATGATGAGGTTTTGGATGCTGTCTTTACGGGGGCTTATGTTGAAACCGACGACCTTAACATGAAGCTTGATTGGAGTGATATAATGGGGCGTGTTACTTTTCCTTCATTGAACTTTCATCATGGGGAGTGTAGTACCCATGCTGAGCATTCCCAAGAATTCACCAAGGACCAGGAACCATTGGCAGGCACTTTTGGAATTTCTGCGCCTGAAAATGTCCAGCCTCTTGACATGGCTGAGCAACATGGTGTGGGAACAAATTCGATGGAAGATGGAGACAATGGTGAGCTGAGCGATATTGCAAATCTTCTGGATTTCAATTATGCATCGGATGATCTGGATATGGATCTATTCTTGGATGCCAACGAGAATCTTCCAATGCTTGATGATGGATCATTCTTGGAACCAATGATCTTGGGATTGTGA 1038 0.5096 MAPLGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPKSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVSHGERTVGMKKTLVYHIGRAPHGRRTNWVMHEYKLLEEELARAGTVLDVFVLCRIFEKSGAGPKNGAKYGAPLDEKEWDVEEEEEEEQKEVAPLPIAENLVAPLLTMADDEVLDAVFTGAYVETDDLNMKLDWSDIMGRVTFPSLNFHHGECSTHAEHSQEFTKDQEPLAGTFGISAPENVQPLDMAEQHGVGTNSMEDGDNGELSDIANLLDFNYASDDLDMDLFLDANENLPMLDDGSFLEPMILGL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1222 345 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Ssu7g1222 345 Pfam No apical meristem (NAM) protein 6 131 IPR003441 GO:0003677|GO:0006355
Ssu7g1222 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78 4 279 - -
Ssu7g1222 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 279 - -
Ssu7g1222 345 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Ssu7g1222 345 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1222 Ssu-Chr7 26983102 26984917 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1222 1 175 NAC Transcription Factor Family AT5G04410 68.571 1.68e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g1222 NAM 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1222 - - gmx:100808260 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1222 7 26983102 26984917 Ssu7g1222 7 26983102 26984917 ECH