Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1221 ATGGCACCCCTCGGTCCGGGCTTCCGATTCCACCCCACCGACGAGGAGCTCGTCGTGTTCTACCTGAAGCGGAAGATCACCGGGAATCTCTCCCGGTACGACCACATCGCTGTCGTCGACGTGTACAAGCTGGAGCCCTGGGACCTTCCCCCTAAGTCGAAGCTGAAGACGAAGGACTTGGAATGGTACTTCTTCAGCGTGCTGGACCGCAAGTACGGAAACGGCTCGAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACCGGAAAAGACCGCCCCGTCAGCCACGGCGAGCGCACCGTCGGAATGAAGAAGACCCTCGTTTACCACATCGGCCGGGCTCCACACGGCCGTCGCACCAATTGGGTCATGCACGAGTATAAGCTTCTCGAGAAGAATTGGCACGTGCCGGAACAGTGCTGGATGTGTTTGTGCTGTGTAGGATTTTCGAGAAGAGTGGTGCGGGGCCCAAGAATGGGGCCAAGTATGGTGCTCCGTTGGACGAGAAGGAGTGGGAtgtggaggaggaggaggaggaggagcagAAGGAGGTGGCTCCCTTACCCATTGCTGAAAATTTGGTGGCTCCCTTGCTGA 603 0.5589 MAPLGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPKSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVSHGERTVGMKKTLVYHIGRAPHGRRTNWVMHEYKLLEKNWHVPEQCWMCLCCVGFSRRVVRGPRMGPSMVLRWTRRSGMWRRRRRRSRRRWLPYPLLKIWWLPC 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1221 200 ProSiteProfiles NAC domain profile. 4 152 IPR003441 GO:0003677|GO:0006355
Ssu7g1221 200 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 138 - -
Ssu7g1221 200 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86 5 138 - -
Ssu7g1221 200 SUPERFAMILY NAC domain 3 136 IPR036093 GO:0003677|GO:0006355
Ssu7g1221 200 Pfam No apical meristem (NAM) protein 6 131 IPR003441 GO:0003677|GO:0006355
Ssu7g1221 200 Gene3D NAC domain 13 153 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1221 Ssu-Chr7 26972600 26973397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1221 1 162 NAC Transcription Factor Family AT5G04410 61.818 9.08e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu7g1221 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1221 - - vun:114191703 276.174