Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1218 ATGTTATCAGTTGAAGAATTAATAGAAGGCTGTTATAGTTCACCTGAGTTGCCACAAGTTCCTGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGGACCACAGGGATAAGCAAAGGTGTGGTTCTGACTCATGCAAACCTCATTTCCATAATGAGACTACTCTTATGGTCTACTGATGTCAGTGGATCCCAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCATATCTATGGACTGGTGTTCTTTGGATTAGGATTGTTGTGTGTTGGTGTCACAACAATTTTGATGCAGAAATTTGAATTCCAAGGTATGCTTGATGCAATCCAGGAGCACAAGGTTAATAACTTACCTGCAGTGCCACCAGTGATCCTTGCATTAGTGAAAAATGCAAGCAAAGCTAGGTGTGACTTGTCCAGCCTAAGAAGGGTGGGATCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACAGGAGTTTAGGAAGCTGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGGCTAACAGAAACTTGTGCTGGAGCAACATTTTTTGTCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGTTGATTCCAACTTTTTGTGCAAAAGTTGTAGACATTGAAACGGGCAAGCCTTTGCCTCCTCACAAAGAAGGAGAGTTATGGTTCAAAAGTCCTACTATTATGAAAGGGTATCTGGGAAATTTGGAGGCAACAACTGCAACAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGATGAGAACGGATTTGTTTATATAGTTGAACGAATAAAGGAGCTAATCAAGCACAATGGGTATCAGGTGGCTCCTGCAGAACTGGAGTCTGTGTTGCTAAGTCATCCCCTTATAGTTGATGCAGCGGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCGTATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACAAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAATTATGA 1155 0.4242 MLSVEELIEGCYSSPELPQVPVAQSDTAAILYSSGTTGISKGVVLTHANLISIMRLLLWSTDVSGSQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTILMQKFEFQGMLDAIQEHKVNNLPAVPPVILALVKNASKARCDLSSLRRVGSGAAPLSKEVAQEFRKLFPWVELRQGYGLTETCAGATFFVSDKDAKAHPDSCGKLIPTFCAKVVDIETGKPLPPHKEGELWFKSPTIMKGYLGNLEATTATIDSEGWLRTGDLGYIDENGFVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDKVIQFVAGQVAPYKKVRRVSFIDTIPRSAAGKILRKDLVSQSKYQLVSKL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1218 384 Pfam AMP-binding enzyme 18 281 IPR000873 -
Ssu7g1218 384 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 2 383 - -
Ssu7g1218 384 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 383 - -
Ssu7g1218 384 SUPERFAMILY Acetyl-CoA synthetase-like 13 375 - -
Ssu7g1218 384 Pfam AMP-binding enzyme C-terminal domain 291 366 IPR025110 -
Ssu7g1218 384 Gene3D - 1 277 IPR042099 -
Ssu7g1218 384 Gene3D - 278 380 IPR045851 -
Ssu7g1218 384 ProSitePatterns Putative AMP-binding domain signature. 30 41 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1218 Ssu-Chr7 26940880 26942270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1218 1 380 Monolignol Biosynthesis Gene Families AT4G05160 49.086 7.66e-127 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1218 K10526 - gmx:100783104 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1218 7 26940880 26942270 Ssu7g1218 7 26940880 26942270 ECH