Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1216 ATGGCTTTCCCAatccttttccttctcttcctttccctCCCCTTCTCCTCCGCCAAGCTCAGCGTCGACTACTACCAAAAAACCTGCCCCAACTTCGAAAAGATCGTTTCGGAAAACGTCTTCGCCAAACAAAGCGCGAGCCCCGCCACCGCGCCGGGTCTCCTTCGCCTCTTCTTCCACGACTGCATCACCGACGGCTGCGACGCCTCGATCCTCGTCACTTCCAACGCCTACACCCCCCACGCAGAACGCGATGCCGACCTCAACCTCTCTCTCTCCGGCGACGCCTTCGACGTCATAGCTAAAATCAAAAACGCGTTGGAACTTTCGTGTCCCGGTGTCGTGTCGTGTTCGGACATCGTTGCGCAAGCCACGAGAGACCTCGTTAAGATGGTGGGCGGTCCTTACTACCCCGTGCGGTTGGGGAGAAAGGACAGCACCGAATCCGATGCCGCAAAAGTCAATGCAAACCTTCCGACTCCAAGCATGAGCATGGACCGAATCATTGAGAAGTTTACCTCCAAGGGTTTCACCGTTAAGGAGATGGTGGCGATGACCGGGGCACACACCATAGGGTTCACGCACTGCAAGGAGTTCATCAACAGGATCTACAACTTCAGCAAAACCTCCGATGCCGACCCGCCATGCACCCGAAACTGGTGGCTGGGTTGA 672 0.5446 MAFPILFLLFLSLPFSSAKLSVDYYQKTCPNFEKIVSENVFAKQSASPATAPGLLRLFFHDCITDGCDASILVTSNAYTPHAERDADLNLSLSGDAFDVIAKIKNALELSCPGVVSCSDIVAQATRDLVKMVGGPYYPVRLGRKDSTESDAAKVNANLPTPSMSMDRIIEKFTSKGFTVKEMVAMTGAHTIGFTHCKEFINRIYNFSKTSDADPPCTRNWWLG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1216 223 Gene3D Peroxidase, domain 2 159 217 - -
Ssu7g1216 223 SUPERFAMILY Heme-dependent peroxidases 20 217 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601
Ssu7g1216 223 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Ssu7g1216 223 CDD secretory_peroxidase 19 215 IPR033905 GO:0004601|GO:0042744
Ssu7g1216 223 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 Pfam Peroxidase 42 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PANTHER PEROXIDASE 41 5 216 - -
Ssu7g1216 223 ProSiteProfiles Plant heme peroxidase family profile. 19 223 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PANTHER - 5 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 Gene3D - 24 158 - -
Ssu7g1216 223 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g1216 223 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1216 Ssu-Chr7 26913963 26914634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1216 3 214 Peroxidase AT5G47000 57.209 7.80e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1216 K00430 - gmx:100795676 385.956