Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1212 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAGCCTGCTGATACCCATGCAGAGTTTGAGCGTGGACTGGAGGAGTTTATGCGTGGGCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCCTCCCGTGCGCCAGATGATGAGGATGACGAGGGTGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTGGCAGAGTCGTCGGCTGCACGCAGGCGGCATTCGAGGATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTCGCAGGGTTGCATACTGTCTCGATGTTGGATTCTTCTTTTCTGAGGGGGTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAAAGGCCAAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAAGATGAGCATTTATTGAACCGGGCGCGTGAAAGAATGAGGGAAAGGTTGCGGCAGCAAAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATCATCAGATTGGATTGAGGAATGCACATGGGGATCACAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATCAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAATCGTAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAAAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGGAGCCGGAGGGATGCTCAAGTAAGTGGGGGTGCTCAAGCTGATCGAGTCCGTGATGTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGATATGCTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGGGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCTCCGTCTGTGGCTGCAAGTGAATTAGTTCAGCTAAGACAACGACACACAGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAATCCTGAAACCACATCAAATAGTAATGCCAGTGAAACAAGAGGTGATGAGAACCAAGCAAACAGTCTGGTAGATCGCcaacatgaaaattatgaacAAGAGCAGATACGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAGGGAGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGCAACTGGCAACAGAGTCCATTCAATCAGATGAGAGATGGAAGGGCAGCTAGTGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCACGGGAAGCTCAAAGAATTTGGCATGAGGATAACACAAGGGAAACTGTTGGTAATTGGTCCGAAGGACCTTCTGAAGCTTTGAGGAATCGCCGTGGGGTTCCTTTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGAAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCGTATGTGGAAAGGCAAGGTCGTGCACCAATCGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTGCCTCACCTGAACGGGATCTGGAGGAGCAGGGTGATGAACGTGATGAGGGTCAGCGTGAAACCATCAACAGACCTTCACTGGTGTTGCCCTCTCCACCAGTACCTCCACCACAACCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCGGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCTGGTCAAAATGgATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGCGATAACCATATCGATTCTCTTCTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAGTTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2550 0.4824 MTDFQPLQQKPEPADTHAEFERGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRNSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHHQIGLRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSGGAQADRVRDVVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSVAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTNPETTSNSNASETRGDENQANSLVDRQHENYEQEQIRSLETDVRQLPNRTGTLESSTSESISWQEASNQGGNWQEQIAEEGGGNWQQSPFNQMRDGRAASDWPQEPPRNLAGEDPHPREAQRIWHEDNTRETVGNWSEGPSEALRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDLEEQGDERDEGQRETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGQNGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1212 849 MobiDBLite consensus disorder prediction 480 534 - -
Ssu7g1212 849 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 849 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 551 572 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 52 78 - -
Ssu7g1212 849 CDD mRING-HC-C3HC5_NEU1 796 836 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 432 582 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 650 695 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 173 244 - -
Ssu7g1212 849 Pfam Zinc finger, C3HC4 type (RING finger) 794 841 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 434 458 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 179 217 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 1 23 - -
Ssu7g1212 849 ProSiteProfiles Zinc finger RING-type profile. 797 836 IPR001841 -
Ssu7g1212 849 Coils Coil 842 849 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 298 319 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 39 78 - -
Ssu7g1212 849 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 849 - -
Ssu7g1212 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 847 IPR013083 -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 459 479 - -
Ssu7g1212 849 SUPERFAMILY RING/U-box 796 842 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 222 244 - -
Ssu7g1212 849 Coils Coil 726 746 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 666 682 - -
Ssu7g1212 849 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1212 Ssu-Chr7 26812042 26817547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1212 779 843 C3H Transcription Factor Family AT3G06140 37.879 1.39e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1212 - - gmx:100805607 1535.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1212 7 26812042 26817547 Ssu7g1212 7 26812042 26817547 ECH