LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g1201	ATGACACTCAAGGCTGCTTCAGGTTCTATACCGAGTGCAGACACAAGTAGTGCTGATGAGAAGGAGGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCTTGCCTACAgACTCCTGAAGATGTTGACAAGTTGCACAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGAATATTTTGGAGTTGATATTAATGCTATACGAGAATATGCCAAGACATGCAATGACATTCACCACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAACTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTCTGGGTTCTGGGTTATAAACTTAATGAGGCTCATACACTACTTCAGAGCAAAAGGGCATGCTTTCCAAAACTGGATGCCATTAAAAGTGCATCGGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCAACCGTTGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAGATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTATGAGTACAAGTACATTGTTGATGGGGAATGGATATGCAATAAAGATGAGCTTGTAACCTCTCCTAACAAAGATGGCCATGTCAACAATTTTATTCAAATCCTTGATACAAGCAGTGTTCGGGCCTCCCTTTGGGAGAGATTGACTGGTGATGATCCTGATCTCACAAAGGAAGAACGACTGACAATAAAGGAGTTTCTTGAAGCATGTCCTGATGAGTATCAGTGA	993	0.4189	MTLKAASGSIPSADTSSADEKEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLHRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIHHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRACFPKLDAIKSASADILTGLSKKPVTLSWEDSNCSTVEISGLDIGWGQRIPLDFDDKEGLWFLKRELPEGLYEYKYIVDGEWICNKDELVTSPNKDGHVNNFIQILDTSSVRASLWERLTGDDPDLTKEERLTIKEFLEACPDEYQ	330

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g1201	330	CDD	DSP_laforin-like	48	195	IPR045204	GO:0019203\|GO:0046838
	Ssu7g1201	330	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	49	206	IPR020422	GO:0006470\|GO:0008138
	Ssu7g1201	330	Gene3D	Protein tyrosine phosphatase superfamily	42	321	IPR029021	-
	Ssu7g1201	330	MobiDBLite	consensus disorder prediction	1	30	-	-
	Ssu7g1201	330	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	46	191	IPR029021	-
	Ssu7g1201	330	MobiDBLite	consensus disorder prediction	1	15	-	-
	Ssu7g1201	330	CDD	E_set_AMPKbeta_like_N	208	289	-	-
	Ssu7g1201	330	Pfam	Glycogen recognition site of AMP-activated protein kinase	208	291	IPR032640	-
	Ssu7g1201	330	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	126	184	IPR000387	GO:0016311\|GO:0016791
	Ssu7g1201	330	Pfam	Dual specificity phosphatase, catalytic domain	92	187	IPR000340	GO:0008138\|GO:0016311

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g1201	Ssu-Chr7	26591657	26604616	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g1201	48	327	Protein tyrosine phosphatase (PTP) family	AT3G52180	69.751	3.55e-149	419

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g1201	-		-	gmx:100786287	621.698

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