Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1196 ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGCTGAAGATTCAGGGGAATTCCTCCTCTTCCAATGGAAATGCTGGGAATGTCCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCCCAGGAGAATTACACCATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAACTGTGTATGCATTGAAGATCAtggacaaaaaatttattaccaaAGAGAACAAAACAGCTTATGTGAAGTTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGgttatattttacatttcaaGATACATTTTCTCTATACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGTTCGTCTAACAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTCGATGCTCTCGAATACATACATAATTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATCACTGTCCTTCCAAATGCAGCATCAGacGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCGGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGGAATGACCTATGGGCACTTGGTTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGACGCAAGTGAATggcttatttttcaaagaattaTAGCAAGAGAACTTAGATTTCCAGATTACTTTTCTGAGGAAGCAAGAGACCTTATTGACCGCCTCTTGGATTTGGACCCCAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTACTTTGAAAAGGCACCCATTTTTCAAGGGGGTTGACTGGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCTGGAACCCGGGACTCAGTCACCTGCGTGTGATGATGTTCATGACTCATCATGGAGTCCTTCTCACATTGGGGATGGTTCTGCAGCTTTGGCTAGACAACCTGATGGTGCTACATCATCTTCTGAGGGGACTGGTCACATAACTAGGCTTGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTgaagaaattacaaaaactaacaAGCAAAAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGACTAGTCCatcaaatttcaagatttgcacACCTAAAAAGGTAATGTCGTTTGAGGATGCAAAGCAAAGAGCATGGCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGATTTTGCTGA 1488 0.4005 MLEMEKDFDSKLKIQGNSSSSNGNAGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDTFSLYMALESCEGGELFDQITRKVRLTEDEARFYAAEVVDALEYIHNLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARELRFPDYFSEEARDLIDRLLDLDPSRRPGAGPDGYATLKRHPFFKGVDWDNLRAQIPPKLALEPGTQSPACDDVHDSSWSPSHIGDGSAALARQPDGATSSSEGTGHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSNFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNRFC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1196 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Ssu7g1196 495 Gene3D Transferase(Phosphotransferase) domain 1 132 330 - -
Ssu7g1196 495 ProSiteProfiles Protein kinase domain profile. 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1196 495 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 22 489 - -
Ssu7g1196 495 Coils Coil 473 493 - -
Ssu7g1196 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 489 - -
Ssu7g1196 495 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1196 495 CDD STKc_PDK1 46 315 IPR039046 GO:0004674
Ssu7g1196 495 Gene3D - 369 495 IPR011993 -
Ssu7g1196 495 Gene3D Phosphorylase Kinase; domain 1 46 131 - -
Ssu7g1196 495 MobiDBLite consensus disorder prediction 13 28 - -
Ssu7g1196 495 MobiDBLite consensus disorder prediction 332 376 - -
Ssu7g1196 495 MobiDBLite consensus disorder prediction 1 28 - -
Ssu7g1196 495 SUPERFAMILY PH domain-like 309 493 - -
Ssu7g1196 495 SUPERFAMILY Protein kinase-like (PK-like) 45 359 IPR011009 -
Ssu7g1196 495 Pfam PH domain 390 492 IPR033931 -
Ssu7g1196 495 SMART serkin_6 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1196 Ssu-Chr7 26509265 26517311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1196 1 493 AGC Kinase Gene Family AT3G10540 82.556 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Ssu7g1196 Pkinase 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1196 K06276 - gmx:100788780 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1196 7 26509265 26517311 Ssu7g1196 7 26509265 26517311 ECH